| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1301 |
|---|
| Symbol | |
|---|
| ID | 3965322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1691477 |
|---|
| End bp | 1691671 |
|---|
| Gene Length | 195 bp |
|---|
| Protein Length | 64 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637920375 |
|---|
| Product | carbon storage regulator |
|---|
| Protein accession | YP_526775 |
|---|
| Protein GI | 90020948 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1551] Carbon storage regulator (could also regulate swarming and quorum sensing) |
|---|
| TIGRFAM ID | [TIGR00202] carbon storage regulator (csrA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000000000114714 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0123865 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAATAT TAACCCGCCG AATAGGTGAA ACCTTAATGG TTGGTGACGA AGTTACCGTA
ACCGTTTTGG GTGTTAAGGG TAATCAGGTT CGTATTGGTG TTAATGCACC AAAAGAAATC
GCGGTTCACC GAGAAGAAAT TTATCAACGC ATACAGCGTG AGAAGCAGGA GCAAGGCGAG
CCTGGCAACA GTTAA
|
|---|
| Protein sequence | MLILTRRIGE TLMVGDEVTV TVLGVKGNQV RIGVNAPKEI AVHREEIYQR IQREKQEQGE
PGNS
|
|---|
| |