Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1293 |
Symbol | |
ID | 3965314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1658124 |
End bp | 1659416 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920367 |
Product | Poly(R)-hydroxyalkanoic acid synthase, class I |
Protein accession | YP_526767 |
Protein GI | 90020940 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.987047 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAAC GCAGTTTGAT TGTTGGACTG CTATGGCTTG GCTTGGTATC GGGGGATATC CAAGCGCTTA CACTAGAAGA AGCTGTGGCG TACACATTGG AGTCAAACCC AGAGGTTTTG GCTGCATTGA ATGAATATAA GTCGCGTGAG CATGAAGTTA CTCAAGCGAA AGCGGGGTAT TTACCCAGAG TTTCTGTGTC TGCCGCTGTG GGGCAAGAGC AACGCAAAGC GCCTGCTACT GGTAATGAGA GTGTTGAGCT AGATAGAAAA GAACTAGCTA TTCAGGCTCG TCAAACAGTG TTTGACGGTT TTGCAACCTC GGCAGAAGTT AAGCGTCAAC GGGCACGAGT TGAAGCAGCT GAATTCGAAC TGCAAGCGGT ATCTGGTAAC ACTGCTTTGC GCGCTGCAGA AGTGTATTTG AATGTGTTGC GTCATGCAGA ACTGTTGGAT TTGGCAAGAG ACTCCCTTTG GGAGCACCAA AATATTTATG ACCAAATGAA GCTGCGCAGT GAGACAGGTG TTGGTAGTAA GGCGGATCTT GATCAAATTG CTGCGCGGTT GGCGTTAGCT AATGCAAATA TGATAGTTGC TCAAAACAAT TTTGCGGATG CGCAGAGTAA TTATCAGCGT GTTATAGGCT TGTTTCCAAA TTTGGAAAAC ATGAGTAAGC CAGCTGCTAC TGAAGATTTG TTGCGCACGC GAGAAAAGGC TGTGCAGCAG GCGCTTGAGA ATCATCCGAC GTTAAAAGCG GCGATTGCGG ATGTTACCGC TGCGCAGGCT CAATATAAGG GGGCGAGTAG TGCACTGTGG CCGCGCCTAG AATTGGAAGC CGACAAGCGT TGGGATGAAA ACGTAGGTGG TATAGAAGGC GAAGATGAGG ATTTTGTTGT ATCGCTTCGG CTTAGTTACG ATTTATTTGC TGGCGGCGCT AATCGTGCCC GTAAAAAGCA AACTGCTGTT TTGATTTCTG AAGCGAAAGA TATTCGCAAT AATTCAAGGC GACAGGTAAT CGAAAGTATG GAGCTTTCGT GGAATGCGTA TGACGCGCTT AAAGCGCAGA AAGTGTTTTT AGAACAGCAC GTAGAAGCTG CTAAAGCGAC AAAAACGGCC TATGCCAAGC AGTTTAATAT TGGCCGTCGC ACATTATTAG ATTTACTCAA CACCGAGAAT GAAGTGGTCG ATTCGAAACG AGCACTTATT AACGCCGACT ATGATCAGTT GCATGCGGTA TATCGTATTT ACAATGCATC TGGCTCTATG TTGGCAGCTC TTGGTATAGC GTTAGACAGT TAA
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Protein sequence | MNKRSLIVGL LWLGLVSGDI QALTLEEAVA YTLESNPEVL AALNEYKSRE HEVTQAKAGY LPRVSVSAAV GQEQRKAPAT GNESVELDRK ELAIQARQTV FDGFATSAEV KRQRARVEAA EFELQAVSGN TALRAAEVYL NVLRHAELLD LARDSLWEHQ NIYDQMKLRS ETGVGSKADL DQIAARLALA NANMIVAQNN FADAQSNYQR VIGLFPNLEN MSKPAATEDL LRTREKAVQQ ALENHPTLKA AIADVTAAQA QYKGASSALW PRLELEADKR WDENVGGIEG EDEDFVVSLR LSYDLFAGGA NRARKKQTAV LISEAKDIRN NSRRQVIESM ELSWNAYDAL KAQKVFLEQH VEAAKATKTA YAKQFNIGRR TLLDLLNTEN EVVDSKRALI NADYDQLHAV YRIYNASGSM LAALGIALDS
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