Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1264 |
Symbol | |
ID | 3965246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1619516 |
End bp | 1622287 |
Gene Length | 2772 bp |
Protein Length | 923 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637920338 |
Product | TonB-dependent receptor |
Protein accession | YP_526738 |
Protein GI | 90020911 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000254862 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000223641 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGACGAGCT TTCAGACTCC GTTCAAACGA AACATTATGT CCGCCTCCGT TATCGCTGCC GTTAGTATGG GGGCGCAAGC ACAAACCACC CAGCCAAATG AGATTATTCT CGAAGACGTT ATCGTTACCG GTATTCGAGC GTCCCTTACT GGGGCCATGG ATATTAAACG CAACGCAACG GGCGTTGTGG ATGCAATTAG TGCAGAAGAT ATTGGTAAGT TTCCCGATAC CAACTTGGCT GAATCACTCC AAAGAATTAC CGGTGTTGCT ATTGATCGCA GCAACAACGA AGGCAATCAA GTAACCGTTC GCGGATTTGG CCCAAGCTTT AACCTCGTTA TGCTAAATGG CCGCCAGATG CCCAACTCTT CGGCTTTGTC ATCTACAGCG GTTTCCCGCA GTTTCAATTT TCGCGAAATT GCCGCTGAAT CTGTATCGCG TGTAGAGGTA TACAAAACAG GTAAAGCTCA TGTGCCAAGC GGTGGTTTGG GTGCAACAAT AAATTTACAA ACCGCAAAAC CCTTTGATTT TGATGGCTTT ACCTTACTTG GCAGCACCAA AGGCATCATT GAGTCAAACG CTAGTGGCGG CAACAATGTC ACACCAGAAG TATCAGGCAT GGTGAGCCAA ATATTTGGTG ACGACTCTTT TGGCATACTG GCATCTTTTT CTCATGCGCA GCGTGATTTT CACGTAGATC GTATTGGCAC GGCGAACGGC TGGAGCCAAA GCTACCCTGC ACAATCCAAC CCCGATACTT CGGCCATTAA CACAAACCTT AACCCAAGCC TCACCACATG GCGGGTAGCC ACAGTTGATT TAGATAACGC CGACTACGAG CGCACTCGCC AGAACGGCCA AATAGTTTTG CAATACTTTC CCGACGACGA CTTTAGCGCA AGTGTGGATT ACACCATGTC GCGCTTTGAA GAAAACGGCC AAATGAACCG AATGAGCTTT TGGTTTGATG ACGTAGAAAC AGGTAAAGCC GACGCAAACG GTACTATTAT TAACCCTGCA CGCTCTAACG ACGAACTTAA CTTCTGGGCG TGGGAATACG GGTTTACAAC AGAGAACGAT TCATTTGGTT TAAATATAGA TTGGGCTGCA ACAGAAACAA TTAAACTCGT ATTAGATGCA CACTCTTCTA AATCTCACTC AAACCCCGGC GCACAACCGG CAGAGCGTAT AGCCAACCTA AAAAATCCGT TTGGTGATGC CGCACCCGTA CATATTTCTG CAGACTTCTC TGGCAAGCTA CCTACGGTTG CCTACGACGA TTCCGCACTC GTTGGTGGCG CCTATTCGCG CGAAAATATC GAAGCGGATT TATACCAAGA ACGCGGCAAC GAAGTAGAAA ATACTGTCGA TCAAATTCAA TTTTCTGGTG AATGGGTTAA CCCCAACGAG AGCGTGCTGC GCCAAATAAA TTTCGGTTTC GCAAGCATCA CCAACTCGGT AGATACACTA AGCATTCACA GCTCCAATTT CTCTTTGGGT AACGGTGCAG TCGACATCAG CGATTTAGAC CTAACTTTTA GCCCTGGCGA TATCGGCTAT GAATTTGTAC CCAATTACAG CGCAAACCAA TTTTTAAACT TGGTTGAAGA GCAAGGCCTT AAAAATCCCG CCACGCTAGA TGAAAACGGC ATTGAAGAAA GTATTTCTGC TTTGTACCTA TCGTTAGATC TCGAAACAGA CATTCGAGAT ATGCTATTGC GCACAAACAT TGGCGTGCGC TACGAAACCA CCACAGTAAA CACCTACAGC AAAGGCAAGC CAGTAATAGG TTTTAACTGG GTTTCGCCAC TCGAGCTAGC AAAAATTGTT GCGGATGAAG CGGTTACTCG CACCGCAGAT GCAGATTACA ACCACGTATT ACCCAACTTA GATATAAGCT TAGATATTGT TGAAGACGTT ATCGCGCGTT TATCTTACAG TACAACAATT GCGCGCAGTA ACATCGATGC AATGTACCCC AATGTTACTT ACTATTCCCA CCAACCTAAC GGGCCATTTA CAGCAAGCCA AGGCAATGCC GCGCTGCTTC CGTTCGACTC CGCGAACCTC GACTTTTCTC TTGAGTGGTA CTACGCCGAC GGCAGCTACA TTTCTGGTGG TTACTTTAGC AAAAACGTCG ACAACTTCTT GGCTGCAGGG CAAGAGCTGC AAACCATTAT TGGGCCAGAA GGGCCGCTTA CTAACCCCAG CGCTAATCCA CGCCCTGGTT GCCCAGCGGG TAGCGTGAGC GAGCCAGTAG AAGCATGTAC TTCACAACCT TCCGACCCCG AAATTATTTG GGGAATTGCC ACACCAAAAA ATACCGACGA ATCATTGGTA GATGGCTGGG AATTGAACGT ACAGCACATG TTTGGCCAAT CTGGCTTTGG TGCAATTTTG AATTACACCA CAGTAGATAG CAACGACCGC TACGATGTGT ACGCCATTGA AAACGGGCTA GCACTACAAG GCCTAAGCGA TACCGCTAAC CTTGTTGCCT TCTACGAAAA AAACGGCTTA CAACTCCGGG TGGCCTATAA CTGGCGTGAT AAATTCTTGC TAGCTTCTGG CCCAGAGCCC ACATTTACAG CGGCTTACTC GCAAGTAGAC TTTAATGCGA GTTACGATAT TAATGAAAAC CTCACCGTAT TTATTGAGGG CCTAAACCTT ACAGACGAAG CCACCCACCG CTATGGCCGC TGGGAAAACC AATTGAAGGA CTACGAACAG TATGGCCAAC GCTATGCCTT AGGTATTCGT GCCAAACTAT GA
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Protein sequence | MTSFQTPFKR NIMSASVIAA VSMGAQAQTT QPNEIILEDV IVTGIRASLT GAMDIKRNAT GVVDAISAED IGKFPDTNLA ESLQRITGVA IDRSNNEGNQ VTVRGFGPSF NLVMLNGRQM PNSSALSSTA VSRSFNFREI AAESVSRVEV YKTGKAHVPS GGLGATINLQ TAKPFDFDGF TLLGSTKGII ESNASGGNNV TPEVSGMVSQ IFGDDSFGIL ASFSHAQRDF HVDRIGTANG WSQSYPAQSN PDTSAINTNL NPSLTTWRVA TVDLDNADYE RTRQNGQIVL QYFPDDDFSA SVDYTMSRFE ENGQMNRMSF WFDDVETGKA DANGTIINPA RSNDELNFWA WEYGFTTEND SFGLNIDWAA TETIKLVLDA HSSKSHSNPG AQPAERIANL KNPFGDAAPV HISADFSGKL PTVAYDDSAL VGGAYSRENI EADLYQERGN EVENTVDQIQ FSGEWVNPNE SVLRQINFGF ASITNSVDTL SIHSSNFSLG NGAVDISDLD LTFSPGDIGY EFVPNYSANQ FLNLVEEQGL KNPATLDENG IEESISALYL SLDLETDIRD MLLRTNIGVR YETTTVNTYS KGKPVIGFNW VSPLELAKIV ADEAVTRTAD ADYNHVLPNL DISLDIVEDV IARLSYSTTI ARSNIDAMYP NVTYYSHQPN GPFTASQGNA ALLPFDSANL DFSLEWYYAD GSYISGGYFS KNVDNFLAAG QELQTIIGPE GPLTNPSANP RPGCPAGSVS EPVEACTSQP SDPEIIWGIA TPKNTDESLV DGWELNVQHM FGQSGFGAIL NYTTVDSNDR YDVYAIENGL ALQGLSDTAN LVAFYEKNGL QLRVAYNWRD KFLLASGPEP TFTAAYSQVD FNASYDINEN LTVFIEGLNL TDEATHRYGR WENQLKDYEQ YGQRYALGIR AKL
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