| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1225 |
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| Symbol | |
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| ID | 3968010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1572231 |
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| End bp | 1572980 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637920299 |
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| Product | regulatory proteins, IclR |
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| Protein accession | YP_526699 |
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| Protein GI | 90020872 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0542278 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCCCA TTCGCGACGA CAACCCTCAA ATAAATCAAC CAATTGCCAC TTATACCCTT
ATTGGGCTTA ACGTCGTTGC TTGGTTTGCG CTACAGGGTG CCGGCTTCGG CGACCAGCTT
CACACCTCGG TTTGCCAATA CGGCTTAATT CCTGCCGATT TATTTGCAGC GAATACAAGA
GGCCCTTGTG GCGAAGGTGG ATTGGGATGG GCTGGGTTAT TTAGCTCTAT GTTTATGCAC
GGCAGTTGGA TGCATATACT AGGCAATATG TGGTTTTTAT GGATTTTCGG CGGAAATGTC
GAAGATTCCA TGGGCCCGGT GCGGTTTACT ATTTTTTACT TTTTATGCGG CATTGCCGCC
GCCGCGGCGC AAATAATTAC GAATACCGCA TCGCCTATTC CTATGGTGGG GGCGTCTGGG
GCAATTGGTG GCGTAATGGG CGCTTATATT GTGCTGTTCC CCAAGGTAAA AGTTCACCTA
TTGGTTATGT TTATCATCAC TTTTCGCGTG CCCGCTGTCG CTATGCTCGG CTACTGGGTT
GCAGTACAAC TGCTCGGCGG AATTACATCG TTGGGTGCAT CTGGGGGCGG AGTGGCATTT
TGGGCGCACG TAGGCGGCTT TGCCGCTGGC GCTGCGCTAG TATGGCTTTT TAAAGATGAA
GAGCTTTTGC TAAACCATCC ATACCACGGC TGGAACCAAA CCTATACCGA CCCAACGTCG
GTATGGGATG ACCCGCGCAA CCGGCAATAG
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| Protein sequence | MFPIRDDNPQ INQPIATYTL IGLNVVAWFA LQGAGFGDQL HTSVCQYGLI PADLFAANTR
GPCGEGGLGW AGLFSSMFMH GSWMHILGNM WFLWIFGGNV EDSMGPVRFT IFYFLCGIAA
AAAQIITNTA SPIPMVGASG AIGGVMGAYI VLFPKVKVHL LVMFIITFRV PAVAMLGYWV
AVQLLGGITS LGASGGGVAF WAHVGGFAAG AALVWLFKDE ELLLNHPYHG WNQTYTDPTS
VWDDPRNRQ
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