| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1181 |
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| Symbol | |
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| ID | 3968620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1522189 |
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| End bp | 1524075 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920255 |
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| Product | thiol:disulfide interchange protein DsbD |
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| Protein accession | YP_526655 |
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| Protein GI | 90020828 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4232] Thiol:disulfide interchange protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.753424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0698623 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATACTT CAATTCTACG CCTAACCCAA GCAACAATAG CGTGCCTGCT TTTGACATTG
CTATCGCCAG CATTTGCTGC TGATGGTAAC GCAGCGCAGC AACTCAGTTC CGATGAGGCA
TTCATCCCCT CTATCGAATT AACCGAAGAA GGTCTACTGG TTGCCAGCTG GCAAATCGCT
GACGGCCACT ACATGTACAA AAACAAGTTC GAATTTAAAG TTGCCTCAGG TGATTTTGTC
GAACTAGGCA ATGTAAGCTT CCCTGAAGGC ATAACCAAAA ACGACAAGTA TTTTGGCACT
CAAGAAGTGT ATAAAAAACA CGTTACTTTA GAAGTGCCTG TGGGCGCTTC TGCTCTGGGC
GACTTTAGCG TTCGCGTTAA GTATCAGGGT TGTGCAGAGC AAGGCATATG CTTTGCGCCA
AAACGCAAAA CTTATGAATT CACAGCCAAC AGCATTACGT CACTACCTAC TAGCGGTAGC
GCAATTGCAA CAGCCGGCGA AATAAGCCAA ACAGGTTTAG GCGCCTCATC TGTAGTGCAA
ACCGAAGAAA GCAGATTAAC CACGCTGCTT AAAGAAGGCA CCATTTTAAC CATTATTGGC
GTTTTCTTTT TAGGCGGTCT TGCACTTACC TTCACCCCTT GCGTACTGCC AATGATTCCA
ATTTTGTCTA GCATTATTGT TGGCCAGAAA AAAGAACTCA AAAAGACAGA AAGCTTTGCC
TTATCGTTAT CTTACGTAAT TGGTATGGCG ACTACCTACG CAACACTAGG TGTAATTTTA
GGTGTGGCGG GTAACAACGT AATTGCTTAC CTACAAAACC CATACGTAAT AACCACTTTT
GCAATTTTGT TTGTATTGCT TTCGCTTTCT ATGTTTGGTT TGTACGAGCT ACAACTGCCT
TCAGGCATTC AAAACAAACT TAACAATTTA AACAATAAGC AACAGGGCGG CACTTATATC
GGTACGCTTA TTATGGGTAT TCTTTCTGCC CTAATCGTAT CACCTTGTGT ATCTGCTCCA
CTTGCTGGCG CACTTGTTTA CATCAGCACC ACCCAAGGTG GCGCACTAAT GGGCGGTACC
GCACTCTTCT CTCTAGGTAT GGGTATGGGT ACACCGCTTC TTATAATCGG TACTGGTGGC
GCTCACTTAA TACCTCGTGC AGGCGGCTGG ATGGACGGCG TAAAAGCTTT CTTCGGCGTA
ATGCTACTGG CTGTTGCCAT TTGGTTCTTG GATCGCATCC TACCTTCACA AGTTACTCTT
GCACTTTGGG GCGCATTACT TCTTGGCTCT GGTGTATTTA TGGGCGGCTT GGATTTCAGC
AGCCAGCAAG GTTGGGGACA ATTCAGAAAA ACCGTTGGTT TTATCTCGGT ACTGTACGGC
ACACTAATGT GGATTGGTGC AGCTAGTGGC GCAACTAACC CATTACAACC ATTACAAAAC
CTAGGCTCTA CAACAGTGGT TGCGCAATCT GGTCAACCCT CTGTAAAAGA AAAATTTGTT
AAGGTTTCTA CCCTAGAAGA ATTAGATGCA GAGCTAGCCA TTGCTCGCGA AAACGGCCAG
CCAGTGCTGT TAGACTTTTT CGCTGACTGG TGCGTATCAT GCAAAATAAT GGAGCATGAA
GTATTCCCAT CACCTTCAGT TGCCGCGCAA TTAGATAACT TCTATTTAAT TAAAGCCGAC
GTTACAGACG ATTCTCTTTT ACTAGAGCAT TACAACCTAT TCGGACCACC CAGCTTATTG
TTTTTCGATA ACAGTGGTAA CGAAATGAGC AACTTCCATA TTCGCAGTGA AATTCACGCG
AAAGAACTTG CTCCACATTT AGAGTCTGTA ATTCAAATTG TTCAGCAAGC ACAGCCCGCA
GCGGTTGAAA GCCTAGCTAA AAACTAA
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| Protein sequence | MYTSILRLTQ ATIACLLLTL LSPAFAADGN AAQQLSSDEA FIPSIELTEE GLLVASWQIA
DGHYMYKNKF EFKVASGDFV ELGNVSFPEG ITKNDKYFGT QEVYKKHVTL EVPVGASALG
DFSVRVKYQG CAEQGICFAP KRKTYEFTAN SITSLPTSGS AIATAGEISQ TGLGASSVVQ
TEESRLTTLL KEGTILTIIG VFFLGGLALT FTPCVLPMIP ILSSIIVGQK KELKKTESFA
LSLSYVIGMA TTYATLGVIL GVAGNNVIAY LQNPYVITTF AILFVLLSLS MFGLYELQLP
SGIQNKLNNL NNKQQGGTYI GTLIMGILSA LIVSPCVSAP LAGALVYIST TQGGALMGGT
ALFSLGMGMG TPLLIIGTGG AHLIPRAGGW MDGVKAFFGV MLLAVAIWFL DRILPSQVTL
ALWGALLLGS GVFMGGLDFS SQQGWGQFRK TVGFISVLYG TLMWIGAASG ATNPLQPLQN
LGSTTVVAQS GQPSVKEKFV KVSTLEELDA ELAIARENGQ PVLLDFFADW CVSCKIMEHE
VFPSPSVAAQ LDNFYLIKAD VTDDSLLLEH YNLFGPPSLL FFDNSGNEMS NFHIRSEIHA
KELAPHLESV IQIVQQAQPA AVESLAKN
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