| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1177 |
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| Symbol | |
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| ID | 3968616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1516378 |
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| End bp | 1518957 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920251 |
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| Product | threonine synthase |
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| Protein accession | YP_526651 |
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| Protein GI | 90020824 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0725955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000211988 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACTTAA GAATTACCTC ATATTTTTTA ATTTTAGCTC TATTTTCTAG TGTGGGCTTT
GCTATGCCTG CTGATAAAAA CAGTGATGCT AGCTTGCAAA CTATCGCCCC CAGCCGTGAG
TATAATTTTA ATTTCGGTTG GTTATTTAAG TTGGGAGACA ACCCCACATA CAGTGAAGCC
ACTTATGACG ACAGCGGTTG GCGAAATTTG CGCTTGCCGC ACGACTGGAG TATTGAGCAT
GATTTTGACC CAACGCTGGA TGGTGCAACA GCGTATTTAC CTGGGGGAAT TGGTTGGTAC
CGAAAGTATT TTGTAACGCC GCAAAACAAA AGCTCTAAAC GTTTTTATAT ATTGTTTGAT
GGTATCTACA ACCACTCTAC AGTTTGGTTA AACGGTAAAA AAATAGGAGG GCGCATCAAC
GGTTATACGC CTTTTTATTT CGACATAACC GAGCAGCTTG CAACGGCGGG TAGCGAAAAT
GTATTGGCTG TGCGAGTGGA CCGCAGTCGC TATATAGATA GCCGTTGGTA TCCCGGTGCG
GGGATATACC GCAATGTAAC CATGGTTGCT GTCGATCCGT TACACATTCC TATTTGGGGC
GTGTATGTGC AAACCCCCGT GGCAACTAAA GAGCGCGCCG AGGTGGCGTT GGCTATTGAG
ATAAATAACA AAAGGGCAGC ACCGGCTGAG TTTGTTATAG AAACAAAAAT ATTAGATGCT
AACGCGAAAG AGGTGGGGCG AGCGCAGTCA ACTGAGACGA TACCAGCGGG TGAAGCAGGT
GTATTCCAAA AAAATATTGC GTTTAACTCA CCAAGATTGT GGAGCCCCGA ACAGCCAGCA
CTCTACACCG CTAGAATCAC TATTCGGCAG GGTGAGCACA TAGTTGATAG GCTAGACACG
CGATTTGGAG TGAGGGATAT TTATTTTGAC CCTAAAACGG GTTTTTATTT AAACGGTGTT
AATACGGCAA TAAAAGGGGT GAACTTGCAC CATGATGCTG GCGCCGTTGG GGTTGCCGTA
CCGAAAGATG TATGGCGTCG TCGTTTGGAG AGCCTAAAAC GTGCAGGTAC AAATGCAATT
CGAACTGCAC ACAACCCTGC CTCTGAAGAG TTTTTAAACC TATGCGATGA AATGGGCTTT
TTAGTGCAGG CCGAAATCTT TGACGAGTGG GACAACCCTA AAGATAAGCG CTTAAATCAA
TGGGAGCGGC ACAGCGACAG AATTAGTCGG GGCTACGCCG ACTACTTTCA ACAAGAAGCC
GAAGAAGACC TCAAATTAGC CGTAAAGCGC GATCGCAATC ACCCTTCCAT TTTTATGTGG
AGCATCGGTA ACGAAATAGA GTGGACGTAC CCGCGCTATA AAGAGGCAAC CGGCTATTTT
GATATGAACG CATCCGGTAA TTATTTTTAC AACCCACCTT TTATTAGCGA GCAAGAAATT
AAAGGTCGAT TTCATAAAAG TGAGCCGGGG CAGTACGTAT TGGCGAAAAC GGCAGCTAAG
TTAGCTAGCT GGGTAAAAGA ATTGGATACT ACTCGCCCGG TTACGGCTAA TTTAATTCTG
CCGTCAGTAA GCCATATTTC TGGCTACACC AATGCGTTGG ATGTTGTTGG CTACAGTTAT
AGACGAGTTA TTTATGACTA CGGCCACGAG CGATACCCAG ATAAGCCGAT AATGGGAACC
GAAAACGTAG TGCAGTGGCA CGAGTGGAAG GCGGTGATAG AGCGAGAATT TATTTCTGGC
ACTTTTTTAT GGACGGGTGT GGACTACCTT GGCGAGGCTC ATGGCGCTTG GCCAAGAAAG
GCCGTGCGCA GTGGGATGCT AGATTTAGCC GGTTTTGAAA CCCCTGCTTA CAGCCTGTAC
CGAACTTTGT GGAGTGACGA ACCATATATA GCTATAACAA CCCAAACTGA AGATAAATCG
TTATATAAGC GTGACGGTAA ACAAAAGGTA GTCGAGAAAA CACCTGGCGA TTGGCAATAT
CGTGTGTGGG GCTGGCAGGA TGTGAATCGC CATTGGAACT ACAACAAAAA TGAGTTAGTT
ATCGTTGAGG TGCTTAGCAA TTGCCCCTCG GTTGAACTGT TTTTAGGCGG CCGTTCTCTG
GGAGTGCAAT CGTTAGCAGA TAACCCAGAT AGAATTTTAA AGTGGGCTGT GCCTTTTTCT
GCTGGTGCAT TAACTGCCAA GGGAGTAGGG GAGTGTTCTA TCTTGGCAAA AATAGAAACG
GCAGGGAACC CTGTCGCTGT TTCGCATACC ATTGATCACA AAAAGCTACC GCTAGATGGC
GAAAGCGTAG CGCACGTAGA AGTGCAATTG GTCGATAAAA AAGGCAGGCC AGTTAGCCAT
CAAGATGTAG TTATCGAATT CGAGCTTGCA GATGAATTAG AGTTGCTTGG CACAGATAAC
GGTCGTACAT CTAGAATGGA GCGCTATAAA AGCACAAGGC TGCGAACAAG TGAAGGTAAG
GCATTACTTA TTGTGCGCGC TAAAGCCAGC GCGACTACAC CGCCACTAGG CGCTGCGGCA
ATAAAGACTA TTGACCTTGA AAAAGCTGTA AGCACAAAAA TAATGGGATC TGTGCAGTAA
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| Protein sequence | MDLRITSYFL ILALFSSVGF AMPADKNSDA SLQTIAPSRE YNFNFGWLFK LGDNPTYSEA
TYDDSGWRNL RLPHDWSIEH DFDPTLDGAT AYLPGGIGWY RKYFVTPQNK SSKRFYILFD
GIYNHSTVWL NGKKIGGRIN GYTPFYFDIT EQLATAGSEN VLAVRVDRSR YIDSRWYPGA
GIYRNVTMVA VDPLHIPIWG VYVQTPVATK ERAEVALAIE INNKRAAPAE FVIETKILDA
NAKEVGRAQS TETIPAGEAG VFQKNIAFNS PRLWSPEQPA LYTARITIRQ GEHIVDRLDT
RFGVRDIYFD PKTGFYLNGV NTAIKGVNLH HDAGAVGVAV PKDVWRRRLE SLKRAGTNAI
RTAHNPASEE FLNLCDEMGF LVQAEIFDEW DNPKDKRLNQ WERHSDRISR GYADYFQQEA
EEDLKLAVKR DRNHPSIFMW SIGNEIEWTY PRYKEATGYF DMNASGNYFY NPPFISEQEI
KGRFHKSEPG QYVLAKTAAK LASWVKELDT TRPVTANLIL PSVSHISGYT NALDVVGYSY
RRVIYDYGHE RYPDKPIMGT ENVVQWHEWK AVIEREFISG TFLWTGVDYL GEAHGAWPRK
AVRSGMLDLA GFETPAYSLY RTLWSDEPYI AITTQTEDKS LYKRDGKQKV VEKTPGDWQY
RVWGWQDVNR HWNYNKNELV IVEVLSNCPS VELFLGGRSL GVQSLADNPD RILKWAVPFS
AGALTAKGVG ECSILAKIET AGNPVAVSHT IDHKKLPLDG ESVAHVEVQL VDKKGRPVSH
QDVVIEFELA DELELLGTDN GRTSRMERYK STRLRTSEGK ALLIVRAKAS ATTPPLGAAA
IKTIDLEKAV STKIMGSVQ
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