| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1171 |
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| Symbol | |
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| ID | 3968436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1506188 |
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| End bp | 1506961 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920244 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_526645 |
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| Protein GI | 90020818 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.730617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000152208 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGCTC AAGCACAGTT CGTAGCGCTA TCTACTATTG TTCGCAAAGA AGTTAGACGT
TTTACCCGCA TTTGGATGCA AACGCTGTTG CCACCCGTTA TTACAATGGG CTTATATTTT
ATTATTTTTG GCAACCTCAT CGGTTCACGC ATTGGGCAAA TGGGTGGTTT CGATTATATG
GCCTTTGTGG TGCCGGGCCT TATTATGATG TCCGTTATTA ATAATTCTTA CTCAAATGTG
GTGTCTTCTT TTTTTAGCGC GAAATTTACC AAAAGCATTG AAGAGCTACA GGTAAGCCCA
ACGCCTAGCT ACATTATTAT GTTGGGGTAT GTGTCCGGTG GTGCGCTGCG CGGTTTGTTA
GTGGGGGCGA TAGTAACGGG TGTGTCGCTA TTTTTTACCG ATATGCAAAT TAAGCATGTT
GGCATTACGA TGCTTGTGGT GTTGCTTACT GCGATGCTAT TTGCGGTGGC GGGTATGATC
AACGCTATTT TTGCTAAATC CTTTGACGAT ATTTCAATTA TCCCTACCTT TGTACTTACG
CCAATGACGT ACTTAGGGGG TGTTTTTTAT TCTATCTCTC TACTGCCCGA GTTTTGGCAG
GGTGTATCTA AGCTCAACCC CATTTTGTAT ATGGTGAATG CTTTCCGTTA TGGGGTGTTG
GGTGTATCGG ACGTAAGTAT TGCGGGTTCT TTAGCTGGCA TATTTGTATT TTTATGTATC
GCCGTGGTTT ATTGTTTGTA TTTGTTGGAA AGCGGCAAAA AACTGCGCAA TTAG
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| Protein sequence | MNAQAQFVAL STIVRKEVRR FTRIWMQTLL PPVITMGLYF IIFGNLIGSR IGQMGGFDYM
AFVVPGLIMM SVINNSYSNV VSSFFSAKFT KSIEELQVSP TPSYIIMLGY VSGGALRGLL
VGAIVTGVSL FFTDMQIKHV GITMLVVLLT AMLFAVAGMI NAIFAKSFDD ISIIPTFVLT
PMTYLGGVFY SISLLPEFWQ GVSKLNPILY MVNAFRYGVL GVSDVSIAGS LAGIFVFLCI
AVVYCLYLLE SGKKLRN
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