| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1141 |
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| Symbol | |
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| ID | 3968385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1477589 |
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| End bp | 1477969 |
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| Gene Length | 381 bp |
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| Protein Length | 126 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637920212 |
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| Product | MSHA pilin protein MshB |
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| Protein accession | YP_526615 |
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| Protein GI | 90020788 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTAAGA AACAATCAGG CTTTACACTA ATTGAGTTAA TTGCAGTTAT TGTAATATTA
GGGATTTTGG CTGCCACAGC AGTACCAAAA TTTGTGGACT TATCAGACGC AGCGGAAACC
GCTACGGCTA GGAATATTGC TGGCAGTATC GAAAGCTCCA GCGCGTTAAA CCACGCAGTG
GATATTGCTG TAGAGGCAAG TCTCACCAGT GAAACGTTTG AAGTGATTGA TGACTGCGAA
GATGGCGCAT TACTACTAAC AGGTGGGTTA CCTACTGGTT ACACCATTAC AGCAGCCGCA
GTTGCCGATA AGGCGACAGT GAGTTGTAAC CTTGTTTATA ACTCAACAAG CTACCCATTT
AATGTTATTG GAACGCGATA G
|
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| Protein sequence | MVKKQSGFTL IELIAVIVIL GILAATAVPK FVDLSDAAET ATARNIAGSI ESSSALNHAV
DIAVEASLTS ETFEVIDDCE DGALLLTGGL PTGYTITAAA VADKATVSCN LVYNSTSYPF
NVIGTR
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