| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1120 |
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| Symbol | |
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| ID | 3968307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1450940 |
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| End bp | 1452880 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637920191 |
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| Product | RNAse R |
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| Protein accession | YP_526594 |
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| Protein GI | 90020767 |
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| COG category | [K] Transcription |
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| COG ID | [COG4776] Exoribonuclease II |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02062] exoribonuclease II |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000000276354 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGATA AAACGACGCT CTCGCAGCTC TCACAACTAA AGCAAGCCAT TCACGAATCT
AAAGAATACG CCACAGGGAC AGTCGCCAGT ACCAACGGTC GATTTGGCTT TGTTAGGCTA
ACCGACGGCA GAGATGCTTT TCTCGACCCA GAGAAAATGC AATTTGTTCT CCCCGGCGAC
GAAGTTAAGA TTTTAGTGAC CACTAACGAC AAAAAGCAGC TAGAAGCTAC AATCGAGCAG
CTTATCGACT CGCCATTGAA GCGATTTGTT GGCACCTACA GGGTGAAAGG GAACGCACAT
TTCGCCGTAC CAGACGACCC CAAGGTGAAC CGCTGGATAT TTATTCCCCC CAAAAGCCGT
AAAGGCTGTA AAGAGGGTGA AAAAATTGCG GCCAAGATAA TTCAGCACCC TGCGCAAGAT
GGCAAAGCCC AAGCGAAGGT AATTGAACGT ATTGGCCAGC CAGACGATCA CCATATTGAG
TACAAGTACA CGGTTGCTAA GTACGACCTC AGCCCGTGGA ACAAAGAAGG CGAAGACGAG
CAGCTAAAGA AAATTCGCGC TAGTATAGAG GCCGAAGAAT TCGGCGAGCG CGAGGATTAC
ACCCAACTGC CCTTCGTAAC TATCGACTCC CCTACCACGC GTGATATGGA CGACGCTGTG
CATATTGCCG AGCAAGACGG CAAAACCGTG CTCACAGTAG CCATTGCCGA CCCTGCAAGC
TTTATTGCGC CTGGCAGCCC ATTAGCAAAA TTAGCCGAGC GCCAAGCGCA ATCGACTTAT
ATGCTAGGCG GAATTATCCC CATGTTGCCC GAATCGCTGG CTAACGATTG CTTTTCTTTG
GTAGAAGGCA AAAAACGCCC TGCGTTGGTG TGCACAATCA CCTTAGCGAA TGATGGCGCG
GTAGAAGATT ACAAGTTTGA ACGCGCGGTT ATCCAATCTA AATACAAGCT CAACTACCAA
CAAGTAGCTG AGTTTTTAGA GGGCACCAAT ATAGAAGGCC TGCCTGCGGA TGCTGCAGAT
AACATTTCCA AACTAAGTGA ACTGGCTACT TTGCGTTACC AGTATCGCAC CGAGCACAAC
TTAATTGGCC AAGATCAACT CGACTACGAT ATCCGCTTGG ATGACAAAGG CAAGATTAGC
GAGATTCGCC CTCGCTCTCG CACCGTTGCT CACAAATTAG TAGAAGAAGC CATGCTTCTA
ACCAACCAGT GTGCAGGCGA GTTTCTAGCG CAAAACAAGT TGGGCTTACA CACCGTACAC
GGCGGCTTTA GGCTTGACCG CATAGGCGAA GTAAATGCGC TGCTTAAAGA GGAGCAAATT
ACCCCAGAAG GCGATATCAC CGAACTTGAA GGTAATTTAC AGCTTATTAA GGCGCTTTCT
GCCAACGAAC GCCAACGCAA CTTAATACCT GCTTTGCGCA GAATGATGCA ATCGGCAGAG
TTGAGTGATG AAGCAGGCCC GCATATGGGC ATGGGCTTTA AACACTACGC CACCTCAACC
TCACCAATTC GTCGCTATGC TGATCTCTAC AATCACTGGG CAATACACAG CGTATTAACC
GGCAGTAAGC CGTACACCTT TAAGCCGCAT CAATTAGAGC GCTTAAAAGA AACGTTACAG
GCTGGCCGAC AAGCAGATCG CGAAATTTAT CAATGGTTGT TGTGCCAGTA TGTAGAAGCC
TCACTAATTG GCTTTGAAGG CCGCGGTAAG GTGCGCATTG TTACTCAACA GGGCTTCGGT
GTTCGCCTGA TAGAAAATGG CGTAGATGGC TTTATCGCCT TTCCGAAATC GCAAGAGAAA
CAATTTGACG CTAAACGTAT GACACTCACA GTTAACGGTG TTACCTACCG CGCTGACTGT
GAAGTAGATG TAAAAGTTGT AAGCGTTGAC CAAGAAAAAC GCCGTATCGC ATACGCGTTA
GTCTCTCCTG ACGCGGAATA A
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| Protein sequence | MLDKTTLSQL SQLKQAIHES KEYATGTVAS TNGRFGFVRL TDGRDAFLDP EKMQFVLPGD
EVKILVTTND KKQLEATIEQ LIDSPLKRFV GTYRVKGNAH FAVPDDPKVN RWIFIPPKSR
KGCKEGEKIA AKIIQHPAQD GKAQAKVIER IGQPDDHHIE YKYTVAKYDL SPWNKEGEDE
QLKKIRASIE AEEFGEREDY TQLPFVTIDS PTTRDMDDAV HIAEQDGKTV LTVAIADPAS
FIAPGSPLAK LAERQAQSTY MLGGIIPMLP ESLANDCFSL VEGKKRPALV CTITLANDGA
VEDYKFERAV IQSKYKLNYQ QVAEFLEGTN IEGLPADAAD NISKLSELAT LRYQYRTEHN
LIGQDQLDYD IRLDDKGKIS EIRPRSRTVA HKLVEEAMLL TNQCAGEFLA QNKLGLHTVH
GGFRLDRIGE VNALLKEEQI TPEGDITELE GNLQLIKALS ANERQRNLIP ALRRMMQSAE
LSDEAGPHMG MGFKHYATST SPIRRYADLY NHWAIHSVLT GSKPYTFKPH QLERLKETLQ
AGRQADREIY QWLLCQYVEA SLIGFEGRGK VRIVTQQGFG VRLIENGVDG FIAFPKSQEK
QFDAKRMTLT VNGVTYRADC EVDVKVVSVD QEKRRIAYAL VSPDAE
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