| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1106 |
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| Symbol | dnaE |
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| ID | 3968293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1428200 |
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| End bp | 1431721 |
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| Gene Length | 3522 bp |
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| Protein Length | 1173 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637920177 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_526580 |
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| Protein GI | 90020753 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTCTC AATTCGTCCA CCTCCGTGTC CGCACAGAAT TCTCCCTTGT CGATAGTATT
ATCCGGGTAA AGCCGCTTGT GGCGCGGGCT GCGCAGGCGC AGATGCCTGC AATTGCGGTG
ACGGATTTCC ACAATTTCTT TGGCTTGGTT AAGTTCTACA AAGCGGCTCA AGGGGCGGGG
GTTAAGCCTA TTTGCGGTTG TGATTTTCGC ATGGAGCCGT TGGACGAAGA GAGCAACCCA
GCTATTTTTA CGCTACTTGC GATGAACCCC GAGGGTTATC GCAATATTAC CGAGCTTATT
TCACTCAGTT ACCAAAAGGG CCAGAAACAC GGTGAGCCCT ATATTAAGTT TGAGTGGTTG
GAGAAGTTTT CGGCGGGTGT TATTGCGTTG TCTGGTGGGC GTGTTGGCGA GGTTGGTCAG
GCGCTTGTGG GTAATCGGCA GGTGGATGCA GAGGCAGCGC TGCAGCGTTG GATAGATGTA
TACCCCAATC GCTTTTATAT TGAATTACAG CGCACGGGGC GCGAAAACGA AGAGCGTTAT
TTGCACAAAG CTATGGCGTT GGCCGAAAAG TATCAATTGC CGGTAGTAGC AACTAACGAT
GTGCGATTTT TAGATCAAGA TTTATTCGAT GTGCACGAAG CGCGCGTATG TATTGGTGAA
GGGCGCGCAT TGGATGACCC TCGTCGAGAG CGCAAATACA CTGATCAACA ATACTTAAAA
ACTGCAGAAG AAATGCAGGA GTTGTTTAGT GATATTCCCG AAGCCATTGA AAACACCGTA
GAAATTGCCA AGCGCTGCTC AATTGAAATT CAATTGGGCA CGTACTTCCT GCCTGAATAC
CCCATTCCTG AAGGGATGAC CGAGAACTCC TTTTTCGAAA AGATATCTTA CGAAGGTTTG
GAGCGGCGTT TAAAAACTAT TCTAAAAGAA GACGATCCGG ATTACGCGAC GAAAAAACAG
CCGTATTTAA ACCGCTTGAA ATTTGAGCTA GATATTATTA TTCAGATGGG GTTCCCCGGG
TACTTCCTCA TCGTGATGGA CTTTATCCAA TGGGCCAAGG ATCACAATAT TCCTGTAGGG
CCCGGTCGTG GTTCGGGTGC GGGTTCACTT GTGGCCTATG TGTTGGATAT TACCGACTTA
GACCCGCTGC AATATGATTT GCTATTCGAG CGATTCCTCA ACCCAGAGCG GGTATCCATG
CCGGATTTCG ACGTGGATTT CTGTATGGAG AAACGCGACC AAGTAATCAG CTATGTGGCG
GATAACTACG GGCGCGATGC GGTATCGCAA ATTATTACCT TCGGTACCAT GGCGGCGAAG
GCTGTGGTGC GCGACGTTGC TCGTGTTCAA GGTAAATCCT ACGGCTTGGC GGACAAGCTT
TCTAAGATGA TTCCGCCAGA CCCAGGTATG ACCCTTACCA AAGCCTTCGA GCAAGAGGAG
CCGTTGCGAG AATTTTTGGC AATGGACGGT GATGGCCAAG AAATTTGGGA TATGGCCCTT
AAGCTAGAAG GTATAACCCG CAACGTAGGT AAGCACGCCG GTGGTGTTGT TATTGCGCCT
ACGCGTCTTG TGGATTTTGC GCCGCTGTAT TGTGATGAGA GTGGATCGGG CCTTGTTACC
CAGTTTGATA AAAACGACGT GGAGGAGGCG GGCCTCGTTA AGTTTGACTT TCTGGGTTTG
CGTACACTTA CTATCATCGA TTGGGCAGTA AAAATGATCG ATGCCCAGCG CACCAAGCTG
GGTGACCCAC CGTTAGATAT TTCCGCAATT CCGCTGGATG ACGCTAAAAC ATTTGCCCTG
CTGAAGCGCG CAGAAACCAC CGCGGTGTTC CAGCTGGAAT CGCGCGGCAT GAAAGACCTT
ATTACGCGTT TAAAACCCGA TACACTCGAA GAAATGATCG CATTGGTTGC GCTTTTCCGG
CCTGGGCCGC TGCAGTCGGG CATGGTTGAT GACTTTATTA ACCGTAAACA TGGGCGGGCG
CAGGTAGCCT ACCCAGATGC GAAATATCAG CATGAATGCC TACAGCCTAT TCTAGAGCCC
ACCTATGGGG TAATTGTTTA CCAAGAACAG GTAATGCAAA TTGCGCAGGA GCTGGCAGGT
TATTCGCTCG GTGGCGCAGA TTTGCTTCGC CGTGCAATGG GTAAGAAAAA ACCCGAAGAA
ATGGCGAAGC AGCGCTCTAC ATTCCAAGAC GGCGCAGCGT CTAAAGGTAT CGACCCAGAA
CTTGCCATCA AAATTTTCGA CTTGGTGGAA AAGTTCGCAG GTTACGGTTT TAACAAATCT
CACTCCGCAG CTTATGCGTT AGTTTCTTAC CAAACCGCTT GGTTGAAGGC GCATTTTCCT
GCGCACTTTA TGGCTGCCAC CATGTCTTCG GATATGGATA AAACTGATAA GGTTGTAACC
TTTATCGAAG AATGCCGCAA TATGAAACTC AACCTATTGC CGCCGGATGT AAACCGCGGC
GAGTTTCAAT TTACGGTGGA TGACGACAAT AACGTCATAT ACGGTTTGGG TGCCATTAAA
GGCTTAGGAG AAGGGCCCGT TGAGGCCATT ATTGCGGCCC GTAAAGATGG TGGCGACTTT
AAAGATTTGT TCGATTTTTG TGCGCGAGTG GATAGCAAGA AAATCAACAA ACGCGCCCTA
GAAGCGCTAG TGCGCAGTGG TGCGTTGGAT AACCTCGGGC CTGGCATAGA CGTTGATTAC
GACCGCGCCG TAATGGCGGC GGCAGTACCC GAAGCAGTGA AAGCCGCTGA GCAGAGTGCA
GCCAATGCCA ACGCGGGTAT GAGCGACCTA TTTGGTGAGG TTGTACCTGT AGCCAGTGAG
CGTGGTGATG CTTATTCCGA GTTTACTCAT GTGCGCCGCT GGAGTTTAAA AGAGCGTTTA
AATGGTGAGC GCGATACCTT GGGCTTGTAC CTCACGGGTC ACCCCATTGA TGAATACGAC
GAAGAGCTTA AGCACCTTGT TTCTAATCGC ATAGTGAATT TAAAGCCAGA TAGAGCCAAG
CAAAAGGTTG CAGGTTTGGT AGTGGCGTTT CGGGTAATGA AAACCAAGCG CGGCGATAAA
ATGGCCTTTG TTACTTTGGA TGATCGCACC GGACGCCTAG AAACAGCGGT ATTTGCCGAT
ACCTATAACG AATATAAAGA CAAGTTAATT AAAGACGCGC TGCTAGTGAT TGAGGGCCAA
GTAAGTAACG ATGATTACAG TGGCGGCCTT AAAATGCGCG CCGATTCCGT AATTGATATG
AGCGAAGCGC GCGAGCAGAA TGTAGCCGGT ATTAAAGTGC ATTGGCACAT AGAAAAACTA
CCTAAAAATT ACTCTAACCA GTTTAGAGAT ACGCTGCAAC AATATAGCGA TGGCGGTTGC
CCTGTAACTA TTATTTACCA TAAGTCTGCA AGCTCGGTCG AGCTTAAGTT GGGGGACGAT
TGGCGGGTTC GCCCGAGCGA AGAACTATTA GTGAATCTGC GTGGTCAGTA CGGTAACGAT
GCCGTGGAAT TGCTGTATAA AACCAGTAGT CCTTCCTACT AA
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| Protein sequence | MSSQFVHLRV RTEFSLVDSI IRVKPLVARA AQAQMPAIAV TDFHNFFGLV KFYKAAQGAG
VKPICGCDFR MEPLDEESNP AIFTLLAMNP EGYRNITELI SLSYQKGQKH GEPYIKFEWL
EKFSAGVIAL SGGRVGEVGQ ALVGNRQVDA EAALQRWIDV YPNRFYIELQ RTGRENEERY
LHKAMALAEK YQLPVVATND VRFLDQDLFD VHEARVCIGE GRALDDPRRE RKYTDQQYLK
TAEEMQELFS DIPEAIENTV EIAKRCSIEI QLGTYFLPEY PIPEGMTENS FFEKISYEGL
ERRLKTILKE DDPDYATKKQ PYLNRLKFEL DIIIQMGFPG YFLIVMDFIQ WAKDHNIPVG
PGRGSGAGSL VAYVLDITDL DPLQYDLLFE RFLNPERVSM PDFDVDFCME KRDQVISYVA
DNYGRDAVSQ IITFGTMAAK AVVRDVARVQ GKSYGLADKL SKMIPPDPGM TLTKAFEQEE
PLREFLAMDG DGQEIWDMAL KLEGITRNVG KHAGGVVIAP TRLVDFAPLY CDESGSGLVT
QFDKNDVEEA GLVKFDFLGL RTLTIIDWAV KMIDAQRTKL GDPPLDISAI PLDDAKTFAL
LKRAETTAVF QLESRGMKDL ITRLKPDTLE EMIALVALFR PGPLQSGMVD DFINRKHGRA
QVAYPDAKYQ HECLQPILEP TYGVIVYQEQ VMQIAQELAG YSLGGADLLR RAMGKKKPEE
MAKQRSTFQD GAASKGIDPE LAIKIFDLVE KFAGYGFNKS HSAAYALVSY QTAWLKAHFP
AHFMAATMSS DMDKTDKVVT FIEECRNMKL NLLPPDVNRG EFQFTVDDDN NVIYGLGAIK
GLGEGPVEAI IAARKDGGDF KDLFDFCARV DSKKINKRAL EALVRSGALD NLGPGIDVDY
DRAVMAAAVP EAVKAAEQSA ANANAGMSDL FGEVVPVASE RGDAYSEFTH VRRWSLKERL
NGERDTLGLY LTGHPIDEYD EELKHLVSNR IVNLKPDRAK QKVAGLVVAF RVMKTKRGDK
MAFVTLDDRT GRLETAVFAD TYNEYKDKLI KDALLVIEGQ VSNDDYSGGL KMRADSVIDM
SEAREQNVAG IKVHWHIEKL PKNYSNQFRD TLQQYSDGGC PVTIIYHKSA SSVELKLGDD
WRVRPSEELL VNLRGQYGND AVELLYKTSS PSY
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