| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1078 |
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| Symbol | |
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| ID | 3968242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1378984 |
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| End bp | 1379472 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920146 |
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| Product | pilin |
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| Protein accession | YP_526552 |
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| Protein GI | 90020725 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.18456 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAGCTA AAATTAAAGG GTTTACTCTT ATAGAATTAA TGATTGTTGT AGCCATTATT
GGCATTCTTG CTGCAGTGGC GTTACCTGCT TATAGCCAGT ATGTGACGCG TGCAAAAATT
GTAGATGGGT TGGCGCTCGT GCAAGAGTTA AAAGGCGATG TAAAAGAGTA TCATCGCTAC
CACAATGTTT TCCCCGCGAC TAATGCGCAA GCGGGTATAC CCGCCGCCAA TAAGCTGCTT
TCCAATTTCG TAACAGGGGT GGAGCTTGAA GGCGGTGCTT TTCATGTCAC CTTTGGGTTT
AAAGCTGGTG CGAGTTTGGA TGGCAAAGTG TTAACGCTAC GTCCAGCCGT TGTGATGGGT
AGCCCGCAAA GCCCTTATAC CTGGGTGTGT GGTTACGACG AGCCGGTAAT GGGCATGGTT
GCCGTTGGTG AAAATAAAAC CGATATAGAT AAATCGCTGC TACCGAGTTC ATGTCGCGGC
GTAATGTAA
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| Protein sequence | MEAKIKGFTL IELMIVVAII GILAAVALPA YSQYVTRAKI VDGLALVQEL KGDVKEYHRY
HNVFPATNAQ AGIPAANKLL SNFVTGVELE GGAFHVTFGF KAGASLDGKV LTLRPAVVMG
SPQSPYTWVC GYDEPVMGMV AVGENKTDID KSLLPSSCRG VM
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