Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1060 |
Symbol | |
ID | 3967854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1359158 |
End bp | 1360624 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637920128 |
Product | primary replicative DNA helicase |
Protein accession | YP_526534 |
Protein GI | 90020707 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0305] Replicative DNA helicase |
TIGRFAM ID | [TIGR00665] replicative DNA helicase |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAT TTGAGCCTAC CGATTATGCG GGTTACGACG ATATCCCCGC AGATATGGAG CACCACTTAG ATGTGCCGGA TACCGGTGTT GAAAGTGAAT CGGCTTCATC TCACTCAATT CTGCCCCATT CTGTAGAGGC AGAGCAGTCT GTATTAGGCG GCTTGCTGCA AGAAGCCTCT AATTTTGATT CGGTAAGTGA AATACTTTCC GAGAAAGACT TTTTTAAAGC CCCGCATAGA AAAATATTCC GCGCTATGGC GCAATTGATG GAGCGCGAAC AGCCCATCGA TGTTATTACC GTATCTGAAT TTTTAAGCGC CGAAGATGAA TTGGTTGGTG CCGGTGGCTT AGATTACCTC TCCGACTTAG CAACAGAAGT GCCGAGCAGT GCAAACGTTG TGGCCTACGC CAAAATCGTG CGCGAGCGCG CCACCCTCAG GCAGTTGATT TCCGCCGCTA CTGAAATAAG TAAAGCGAGC TATAACCCCG GTGGTTTAGC GTCAGATGAG CTACTGCAGC TAGCGGAAAA GCGCGTATTA GAAATATCCG AAGAGCGTCC AAAAGAGGGC GGCTTTGTTG ATGTTAACGC GCTGCTAAAG CAAACCATCG AGAAGATCGA CTTCTTATTT AATTCCGAAG ACGATCTCAC CGGTATTCCT ACCGGTATTC AAGAATTAGA CGAAAAAACC TCTGGCTGGC AGTCGGGTGA GCTTGTTATT TTGGCGGCCC GTCCATCTAT GGGTAAAACA GCCTTGGCGC TTAATTTTGT TGAGGCGGCG GTGTTCTCCC GCGAGCAACA GCCATGCCTA GTATTCAGCC TAGAGATGCC CGCGGATGCG CTGGTTATGC GGATGCTATC TTCCGTAGGG CGCATCGATC AAGGGCGCTT GCGCAACGGC TCGCTAATCG AAGAAGATTG GCCCAAGCTT GAAATGGCGG CGCGCAAGCT AAAAGATAAA AAGTTATTTA TCGACGATAC CGCGGGCCTG TCGCCAAACG AAGTGCGCGC ACGGGTGAAG CGTATTGTGC GCGAGCACGG CAACCCCTCT ATGATCATGG TGGATTACCT TCAGCTTATG CAGGTGCCTG GGTCCACCGA AGGGCGAACG CAAGAAATTT CCGAAATATC GCGCTCTATG AAGGCGCTGG CGAAAGAATA CGAATGCCCT GTGGTGTGCT TATCCCAGCT TAACCGTGGT GTGGAGCAGC GCCCCAATAA GCGCCCAATG AACTCCGACT TGCGGGAATC CGGTGCGATC GAGCAGGATG CGGACGTTAT TCTGTTTATA TATCGCGATG AGTACTACAA CGAAGACAGT CAAGAAAAAG GCGTAGCCGA GCTGATTATC GGCAAGCAGC GTAATGGTGA GATTGGTACC TGTCGAGCGG CGTTTGTGGG TAAATTCACA CGCTTTGACA ACCTAGCTCC AGATTATTAT CCGCCTGGCG GCGGTGGTGG CGACTAG
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Protein sequence | MSEFEPTDYA GYDDIPADME HHLDVPDTGV ESESASSHSI LPHSVEAEQS VLGGLLQEAS NFDSVSEILS EKDFFKAPHR KIFRAMAQLM EREQPIDVIT VSEFLSAEDE LVGAGGLDYL SDLATEVPSS ANVVAYAKIV RERATLRQLI SAATEISKAS YNPGGLASDE LLQLAEKRVL EISEERPKEG GFVDVNALLK QTIEKIDFLF NSEDDLTGIP TGIQELDEKT SGWQSGELVI LAARPSMGKT ALALNFVEAA VFSREQQPCL VFSLEMPADA LVMRMLSSVG RIDQGRLRNG SLIEEDWPKL EMAARKLKDK KLFIDDTAGL SPNEVRARVK RIVREHGNPS MIMVDYLQLM QVPGSTEGRT QEISEISRSM KALAKEYECP VVCLSQLNRG VEQRPNKRPM NSDLRESGAI EQDADVILFI YRDEYYNEDS QEKGVAELII GKQRNGEIGT CRAAFVGKFT RFDNLAPDYY PPGGGGGD
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