Gene Sde_1060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1060 
Symbol 
ID3967854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1359158 
End bp1360624 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content51% 
IMG OID637920128 
Productprimary replicative DNA helicase 
Protein accessionYP_526534 
Protein GI90020707 
COG category[L] Replication, recombination and repair 
COG ID[COG0305] Replicative DNA helicase 
TIGRFAM ID[TIGR00665] replicative DNA helicase 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAT TTGAGCCTAC CGATTATGCG GGTTACGACG ATATCCCCGC AGATATGGAG 
CACCACTTAG ATGTGCCGGA TACCGGTGTT GAAAGTGAAT CGGCTTCATC TCACTCAATT
CTGCCCCATT CTGTAGAGGC AGAGCAGTCT GTATTAGGCG GCTTGCTGCA AGAAGCCTCT
AATTTTGATT CGGTAAGTGA AATACTTTCC GAGAAAGACT TTTTTAAAGC CCCGCATAGA
AAAATATTCC GCGCTATGGC GCAATTGATG GAGCGCGAAC AGCCCATCGA TGTTATTACC
GTATCTGAAT TTTTAAGCGC CGAAGATGAA TTGGTTGGTG CCGGTGGCTT AGATTACCTC
TCCGACTTAG CAACAGAAGT GCCGAGCAGT GCAAACGTTG TGGCCTACGC CAAAATCGTG
CGCGAGCGCG CCACCCTCAG GCAGTTGATT TCCGCCGCTA CTGAAATAAG TAAAGCGAGC
TATAACCCCG GTGGTTTAGC GTCAGATGAG CTACTGCAGC TAGCGGAAAA GCGCGTATTA
GAAATATCCG AAGAGCGTCC AAAAGAGGGC GGCTTTGTTG ATGTTAACGC GCTGCTAAAG
CAAACCATCG AGAAGATCGA CTTCTTATTT AATTCCGAAG ACGATCTCAC CGGTATTCCT
ACCGGTATTC AAGAATTAGA CGAAAAAACC TCTGGCTGGC AGTCGGGTGA GCTTGTTATT
TTGGCGGCCC GTCCATCTAT GGGTAAAACA GCCTTGGCGC TTAATTTTGT TGAGGCGGCG
GTGTTCTCCC GCGAGCAACA GCCATGCCTA GTATTCAGCC TAGAGATGCC CGCGGATGCG
CTGGTTATGC GGATGCTATC TTCCGTAGGG CGCATCGATC AAGGGCGCTT GCGCAACGGC
TCGCTAATCG AAGAAGATTG GCCCAAGCTT GAAATGGCGG CGCGCAAGCT AAAAGATAAA
AAGTTATTTA TCGACGATAC CGCGGGCCTG TCGCCAAACG AAGTGCGCGC ACGGGTGAAG
CGTATTGTGC GCGAGCACGG CAACCCCTCT ATGATCATGG TGGATTACCT TCAGCTTATG
CAGGTGCCTG GGTCCACCGA AGGGCGAACG CAAGAAATTT CCGAAATATC GCGCTCTATG
AAGGCGCTGG CGAAAGAATA CGAATGCCCT GTGGTGTGCT TATCCCAGCT TAACCGTGGT
GTGGAGCAGC GCCCCAATAA GCGCCCAATG AACTCCGACT TGCGGGAATC CGGTGCGATC
GAGCAGGATG CGGACGTTAT TCTGTTTATA TATCGCGATG AGTACTACAA CGAAGACAGT
CAAGAAAAAG GCGTAGCCGA GCTGATTATC GGCAAGCAGC GTAATGGTGA GATTGGTACC
TGTCGAGCGG CGTTTGTGGG TAAATTCACA CGCTTTGACA ACCTAGCTCC AGATTATTAT
CCGCCTGGCG GCGGTGGTGG CGACTAG
 
Protein sequence
MSEFEPTDYA GYDDIPADME HHLDVPDTGV ESESASSHSI LPHSVEAEQS VLGGLLQEAS 
NFDSVSEILS EKDFFKAPHR KIFRAMAQLM EREQPIDVIT VSEFLSAEDE LVGAGGLDYL
SDLATEVPSS ANVVAYAKIV RERATLRQLI SAATEISKAS YNPGGLASDE LLQLAEKRVL
EISEERPKEG GFVDVNALLK QTIEKIDFLF NSEDDLTGIP TGIQELDEKT SGWQSGELVI
LAARPSMGKT ALALNFVEAA VFSREQQPCL VFSLEMPADA LVMRMLSSVG RIDQGRLRNG
SLIEEDWPKL EMAARKLKDK KLFIDDTAGL SPNEVRARVK RIVREHGNPS MIMVDYLQLM
QVPGSTEGRT QEISEISRSM KALAKEYECP VVCLSQLNRG VEQRPNKRPM NSDLRESGAI
EQDADVILFI YRDEYYNEDS QEKGVAELII GKQRNGEIGT CRAAFVGKFT RFDNLAPDYY
PPGGGGGD