| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1025 |
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| Symbol | |
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| ID | 3967779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1308169 |
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| End bp | 1310433 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637920092 |
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| Product | ribosomal protein S18 |
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| Protein accession | YP_526499 |
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| Protein GI | 90020672 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3661] Alpha-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000586584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATAAATC AACGTCTATT TCAGCGTCAG TTTCAATGTT GTAGATTAAT GGCTACTTTG
GGGGTAAATG CCGCTAAGTT TGCCATGTTT GCAGCTATTT GCTTGCAGTT TAGTGTCGCC
GAAGCGGCTA AAAGCCGCGA TGGATATGGG CTGTGGTTAG ATTACCAGCC AATTACCAAT
ACCCGCGAAC GCGAGGGCTA TATAAAAGCA TTAAGCCCAT GGCAGGTAGA AGGCGAAGCT
GCAACTGCCG ATTTTATTCG GCAAGAGCTT ACTGCAGCGT TGGGCGCTAT GCTTGGCGTT
GAGGCTGGTC CAGTGGGTGA TTACACCCAT AACTCCCTCG CTCACCCTGT GGCGCGGCTA
TTGGTTGCAA CTCCAGAAGA AAGCGCTGTT ATTCGCTCTT TGGCTTTAGG CGATGCTTTA
ACTCGAGTAG GGCAAGAGGG GTACCTTATT AAAACCACGC GTTACCGTGA CAAGCCTATC
ACCATTGTTA CCGCGAACAC GCATGCAGGC CTGCTGTATG GCACATTCAA ACTACTGCAG
CTGCTGCAAA CAGGGCAGGC CGTTTCTAAT TTAGCTATTG AGTCCGCCCC AGCAACCAAA
CTGCGTGTGC TTAACCACTG GGATAACCTC GATCGCTATG TGGAGCGCGG CTATGCCGGT
GAGTCTATTT GGAACTGGCA CAAGCTGCCG CACTACAAAT CGCAGCGCTA CTACGATTAC
GCTCGCGCTA ACGCGTCCAT TGGTATTAAC GGTGTGGTAC TAAACAATGT TAACGCCGAC
CCCTTAATTC TTACCCCGCA GTACCTTGTA AAAGTAAAAG CACTGGCAGA TATTTTTAGG
CCCTACGGCA TTAAAGTTTA TCTTTCGGTG AAGTTTAGCT CGCCGAATCT TATTGGCGGG
CTGCCAACAT CCGACCCGTT AGATAAAAAT GTGCAAGCTT GGTGGCAAGC GAAAGCGAAT
GAAATTTACT CGCTCATTCC CGACTTTGGT GGCTTTTTAG TAAAAGCGAA TTCGGAAGGG
CAGCCCGGCC CAGGGGACTT TGGCCGCAGC CATGCACAAG GGGCAAATAT GTTGGCCGAT
GCACTGGCAC CCCATGGCGG CAATGTAATG TGGCGCGCGT TTGTATATAA CGTAGAAGCC
AATGTGGAGC GATCCAAGCA GGCATACAAC GAATTTAAGC CATTAGACGG TACCTTTAGG
CAAAACGTAT TGGTGCAAGT AAAAAATGGG CCAATTGATT TTCAGCCACG TGAACCGTTT
AGCCCGCTGT TTGGTGCTAT GCCCAAAACG CCGTTAATGA TGGAGTTTCA AATTACTCAG
GAGTACTTGG GGTTTAGTAC TCACCTTGTT TACTTGGGGC CGCTGTACGA AGAAGTACTT
AAGGCCGATA CCTATGCGAA GGGGGCAGGG TCTACTGTTG CGAAGGTGGT CGATGGCTCG
CTCTACGGGC ACGGTATAAC GGGTATGGCT GGGGTAGCTA ATATTGGCAG CGATCGCAAT
TGGACCGGCC ATATTTTCGG CCAAGCCAAC TGGTATGTAT TTGGCCAATT GGCGTGGAAC
CCCGAGGTAA GCACTAAGCA AATAGCCGAT GATTGGATTC GCATGACACT CACCCGCGAC
GATAAAGCGG TAAACACCAT TCGCGCAATG ATGATGGCCA GCCGCGAAAC GGCGGTTAAC
TACATGACGC CCCTGGGGCT GCATCACATT ATGGGGTGGG GGCACCACTA CGGCCCAGCG
CCGTGGATAG GCGAGCAAAA ACCCGATTGG ATGCGTGAAG ATTGGACATC TGTTTACTAT
CATAGCGCAA ACGCCACAGG GCTAGGCAAA GATAGAACAG CTTCTGGCAG CAATGTCATA
GCGCAATACC ACGCCCCTTT ACGGCAGGCC TATAGCGACC CGAAAACCAC GCCCACCGAG
TTGCTATTGT GGTTTCATCA TTTGCCTTGG CATTATGAAT TAGCGAATGG CAATAGCCTG
TGGCATGAAC TGGTAGCGCG TTACTATTTA GGCGCGCAGG CTGTGGCAGA AATGGCCAAA
ACGTGGGATG GCCTAGAAGC TAATATCCCC CCGCAGCTAT TCAAACAAGT ACAAATGGCG
CTGGCTATTC AAACCCAAGA AGCCGCGTGG TGGCGCGATG CCTGCGTGCT GTATTTTCAA
AGCTATTCTA AGCAGTCGCT ACCCGAGGGC TTTGCAAAAC CTAAGCACTC GCTCGAATAC
TATAAAGGGT TAAGCTTCCC GCATGCGCCG GGTGACGGGC GTTAA
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| Protein sequence | MINQRLFQRQ FQCCRLMATL GVNAAKFAMF AAICLQFSVA EAAKSRDGYG LWLDYQPITN
TREREGYIKA LSPWQVEGEA ATADFIRQEL TAALGAMLGV EAGPVGDYTH NSLAHPVARL
LVATPEESAV IRSLALGDAL TRVGQEGYLI KTTRYRDKPI TIVTANTHAG LLYGTFKLLQ
LLQTGQAVSN LAIESAPATK LRVLNHWDNL DRYVERGYAG ESIWNWHKLP HYKSQRYYDY
ARANASIGIN GVVLNNVNAD PLILTPQYLV KVKALADIFR PYGIKVYLSV KFSSPNLIGG
LPTSDPLDKN VQAWWQAKAN EIYSLIPDFG GFLVKANSEG QPGPGDFGRS HAQGANMLAD
ALAPHGGNVM WRAFVYNVEA NVERSKQAYN EFKPLDGTFR QNVLVQVKNG PIDFQPREPF
SPLFGAMPKT PLMMEFQITQ EYLGFSTHLV YLGPLYEEVL KADTYAKGAG STVAKVVDGS
LYGHGITGMA GVANIGSDRN WTGHIFGQAN WYVFGQLAWN PEVSTKQIAD DWIRMTLTRD
DKAVNTIRAM MMASRETAVN YMTPLGLHHI MGWGHHYGPA PWIGEQKPDW MREDWTSVYY
HSANATGLGK DRTASGSNVI AQYHAPLRQA YSDPKTTPTE LLLWFHHLPW HYELANGNSL
WHELVARYYL GAQAVAEMAK TWDGLEANIP PQLFKQVQMA LAIQTQEAAW WRDACVLYFQ
SYSKQSLPEG FAKPKHSLEY YKGLSFPHAP GDGR
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