Gene Sde_1009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1009 
SymbolrpmA 
ID3965134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1290773 
End bp1291030 
Gene Length258 bp 
Protein Length85 aa 
Translation table11 
GC content47% 
IMG OID637920076 
Product50S ribosomal protein L27 
Protein accessionYP_526483 
Protein GI90020656 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0211] Ribosomal protein L27 
TIGRFAM ID[TIGR00062] ribosomal protein L27 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.11893e-12 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCACA AGAAGGCAGG TGGTAGTACT CGTAACGGTC GCGATTCCGA AAGTAAACGC 
TTAGGTGTTA AGCGTTTCGG TGGCGAAACT GTGACCGCGG GTAGCATTAT TGTTCGTCAG
CGTGGCACAC GCGTTCACCC AGGTGAAAAT GTTGGTTTAG GCAAAGATCA CACTTTGTTT
GCCAAGGTTG AGGGTGCCGT TAAGTTTGAA GTTAAAGGAC CAAACAATCG TAAATATGTA
AGCATTGTTG CTGCATAA
 
Protein sequence
MAHKKAGGST RNGRDSESKR LGVKRFGGET VTAGSIIVRQ RGTRVHPGEN VGLGKDHTLF 
AKVEGAVKFE VKGPNNRKYV SIVAA