Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0995 |
Symbol | |
ID | 3965120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1276856 |
End bp | 1278271 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637920062 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_526469 |
Protein GI | 90020642 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000812271 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGTATTC GCAGCAGCCT ATTGTCCTCC GGTCTGTTAA AATGCACGCC TTTTTTGGGG GATGATCGTT TGGCAAGTGA AGTTCGGGCT GTAAGCTCGC TAGCATTGTT GTATGCGTTT AGGATGTTGG GCCTATTTAT GGTGCTGCCT ATTCTCGTGC TTTATGCCGG CGACTACCCA GGTGCAACGC CTTTTACTTT GGGGTTGGCA CTTGGTATTT ATGGTTTAAC TCAAGCTGTC TTTCAAATTC CCCTTGGTTT GCTCTCAGAC TTTATTGGCC GCAAACCCGT TATTATTGCA GGCTTGTTGG TGTTTTGTGC CGGCAGTGTG CTTGCAGGTA CGGCCGAATC GGTAGAGTGG TTAATTATTG GTAGAGCCCT ACAAGGCAGT GGCGCCATTG CAAGTACCAT TATGGCCATG GTGGCCGACC TTACCTCTGA GCAAAACCGC ACCAAAGCCA TGGCCGCTAT TGGCGCTTCT ATTGGGTTGT CGTTTTCGCT GGCGATGATT TTAGGGCCTA CGGTGGGCGC GTTTGGTGGC TTATCGGTGG TGTTTTATTT TTCTGCGGTA CTGGCGCTTA TTGGTGTGTG CATTGTGATC TTTTTAGTGC CTCGCCCGCC GCAAGTAGGG CACTCTCACC GCGACAGTGG CGCGGTGCCA GAGCTTATTA TGCAAACCCT TAAAAACACC GAGCTGCTGC GTTTAAATTT CGGTATTTTT ACTTTGCACG CGTTGCTAAT GGCCTGTTTC TTGGCAATTC CTGTTGTAGT GGAAAGTAGT TTAGGTATTC CTCGGGGTAA GCATTGGCAG GTTTACTTGC CAATGTTGGC TATCGCGTTG GGCGTAGTGC TGCCGCTCAT TATGGTTGCT GAGCGCAATC GCAAGTTAAA GCCCGTTTTC TTGTTTGCCA TTGCTGTGCT TGTTGTTTCG CAAGCTAGCT TAGCGGTTGT TCCGTTGGCG GGCTGGCCGT TTTTATTGCT AATGCTGCTG TTTTTCGTGG CGTTTAACCT GCTGGAGGCT TGTTTGCCTT CGTTGGTCAG TAAGCTTGCA CCTGTAGGTG CCAAAGGCAC GGCGATGGGG GTGTATTCCA CTAGCCAGTT TTTAGGGGCG TTTATTGGCG GGTCTGTTGG AGGTTACATT TTTACCCTGT GGGGTATGGA TGGCCTGTTC GCTGCTGGCG CGCTTTGCGC TGCCGCTTGG TTCGCAGTAG CTGCATCTAT GCGCACTCCG CGCCACTTAA GCAGCATGTG TATGGGCGTT CAGCGTGAAA GCGGCGCACA GTGTGCGATT GATGTACTCA CATTGCCGGG CGTAGTAGAG GCTCTGTGGG TCGAGCAGGA AGGTTTGTTG TATTTAAAAG TAGATAATCG AGAGCTGGAT AGGTCCCAGT TGGATGATTT GATTGCGGCG CAATAA
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Protein sequence | MGIRSSLLSS GLLKCTPFLG DDRLASEVRA VSSLALLYAF RMLGLFMVLP ILVLYAGDYP GATPFTLGLA LGIYGLTQAV FQIPLGLLSD FIGRKPVIIA GLLVFCAGSV LAGTAESVEW LIIGRALQGS GAIASTIMAM VADLTSEQNR TKAMAAIGAS IGLSFSLAMI LGPTVGAFGG LSVVFYFSAV LALIGVCIVI FLVPRPPQVG HSHRDSGAVP ELIMQTLKNT ELLRLNFGIF TLHALLMACF LAIPVVVESS LGIPRGKHWQ VYLPMLAIAL GVVLPLIMVA ERNRKLKPVF LFAIAVLVVS QASLAVVPLA GWPFLLLMLL FFVAFNLLEA CLPSLVSKLA PVGAKGTAMG VYSTSQFLGA FIGGSVGGYI FTLWGMDGLF AAGALCAAAW FAVAASMRTP RHLSSMCMGV QRESGAQCAI DVLTLPGVVE ALWVEQEGLL YLKVDNRELD RSQLDDLIAA Q
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