| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0966 |
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| Symbol | rpsC |
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| ID | 3967681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1248056 |
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| End bp | 1248730 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920033 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_526440 |
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| Protein GI | 90020613 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.0153824 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000134918 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGGTCAGA AAGTACATCC AACAGGTATT CGACTTGGTA TTGTCAAAAA GCATACATCT
ACATGGTATG CCGGCAAAGC TGAGTATGCA GACAAGTTGA ATCAAGATTT GCAGGTACGC
AAATATATTC AAAACGCTTT GGCGCACGCA TCTGTGAGCC GTATCGATAT CGAGCGTCCT
GCGAACACTG CACGTGTGAC TATTCACACT GCTCGTCCAG GTATCGTAAT TGGTAAAAAA
GGCGAAGATG TTGAAAAACT ACGCACTGAG CTAACTAAGC AAATGGGCGT TCCTGTTCAT
ATCAACATCG AAGAAATTCG TAAACCAGAC TTAGATGCTG CCTTGGCTGC TCAAAGTGTG
GCTCAGCAGT TAGAGCGTCG TGTTATGTTC CGTCGCGCTA TGAAGCGCAC AGTTCAAAAT
GCAATGCGTC AAGGTGCTGA GGGCGTTAAA GTTCAGGTTG GTGGTCGTTT GGGCGGTGCT
GAAATCGCAC GTTCCGAATG GTACCGCGAA GGTCGTGTAC CTTTGCACAC TCTCCGTGCT
GATATTGACT ACGCAACTGC AGAAGCTTCA ACCACTTACG GCATCATTGG CGTAAAAGTT
TGGATCTTCA AAGGCGAGAT CATTGGCGGT ATCGAAGAAG TTGAAGCCAA TCAGAAAAAG
AAAGGCTCTA AGTAA
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| Protein sequence | MGQKVHPTGI RLGIVKKHTS TWYAGKAEYA DKLNQDLQVR KYIQNALAHA SVSRIDIERP
ANTARVTIHT ARPGIVIGKK GEDVEKLRTE LTKQMGVPVH INIEEIRKPD LDAALAAQSV
AQQLERRVMF RRAMKRTVQN AMRQGAEGVK VQVGGRLGGA EIARSEWYRE GRVPLHTLRA
DIDYATAEAS TTYGIIGVKV WIFKGEIIGG IEEVEANQKK KGSK
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