| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0888 |
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| Symbol | |
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| ID | 3965485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1146113 |
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| End bp | 1147633 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637919950 |
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| Product | fumarase |
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| Protein accession | YP_526362 |
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| Protein GI | 90020535 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000100222 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000142387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACTACAG TAATTCGCCA AGAAGACATC ATCGCCAGTG TCGAAGATGC GCTTCAATTT
ATATCCTACT ATCACCCCAA AGATTTTATT GATGCGGTTT ACGAAGCGTA TCAAAAAGAA
GAAAGCCCAG CCGCAAAAGA TGCGATGGCT CAAATTCTTA TCAACTCCCG CATGTGTGCC
GAAGGCCACC GCCCAATTTG CCAAGATACC GGTATCGTAA CTGCATTTGT TAACGTGGGT
ATGGATGTAC GCGTAGAAGG CGATATGAGC TTTGACGATA TTATTAATGA AGGTGTGCGC
CGCGGTTACG GTTTAGCATC AAACGTTTTA CGTGCGTCTA TTTTGGATGA TCCAGACGGT
GCGCGTAAAA ACACCGGCGA CAACACGCCT GCGGTAATCC ACTACAAAAT GGTGCCAGGC
AACACTATTG ATATTCACGT CGCTGCTAAA GGTGGTGGCT CTGAGGCTAA GTCTAAATTT
GCCATGCTCA ACCCATCCGA CTCCGTTGTA GATTGGGTGT TAAAAATGGT GCCTACAATG
GGCGCTGGCT GGTGCCCGCC GGGTATGTTG GGTATAGGTA TTGGCGGTAC TGCCGAAAAA
GCCATGCTGT TGGCGAAAGA GTCTTTGCTA GACCCCATCG ATATTCAAGA TTTACGCGAG
CGTGGCGCAT CTAACCGTGC TGAAGAGTTG CGTTTAGAGC TTGTGGACAA AGTTAACGCG
TTGGGCATTG GCGCTCAAGG CTTGGGTGGT TTAACAACGG TATTAGATAT TAAAGTTAAA
GACTACCCGT CACACGCGGC AAACAAAGCT GTAGCCATCA TTCCAAACTG CGCAGCAACG
CGCCATGCGC ACTTTGTGCT AGATGGTTCT GGCCCTGCTT TGCAAACGCC CCCAAGCTTA
GACGATTGGC CGGAAGTAAC ATGGGAGGTG GGCGACAGCG TGCGCCGTGT AAACCTCGAC
GAAGTTAAAA AAGACGACCT ACTCGATTGG AAGCCCGGCG AAACAGTCTT ACTTTCCGGT
AAGTTGCTTA CAGGCCGCGA TGCCGCCCAT AAGCGCTTGG TGGATATGAT CAACAAAGGC
GAACCCATGC CGGTTGATTT TACTAACCGC TTTATCTACT ACGTTGGCCC TGTAGACCCT
GTTGGCGATG AGGTTGTTGG CCCTGCTGGC CCAACAACAG CTACACGCAT GGATAAGTTT
ACGGCAACCG TGTTGGAAAA AACCGGTCTT ATCGGCATGG TGGGTAAAGC CGAGCGCGGC
CCAGCAGGTA TAGAGGCTAT TCGCAATAAC AAAGCGGTAT ACCTTATGGC CGTAGGTGGC
GCTGCTTACC TTGTATCTAA GGCGATTGTA GCTTCTAAGG TATTGGCGTT CGAAGATTTG
GGAATGGAAG CCATTTACGA GTTCGAAGTA AAAGATATGC CTGTAACTGT GGCCGTCGAT
ACCAATGGTG AAGCTGTGCA CGAGACTGGC CCTAAAATTT GGAAGGCTAA AATTGAAGAG
CAAGCTTTAA GTATCAAATA G
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| Protein sequence | MTTVIRQEDI IASVEDALQF ISYYHPKDFI DAVYEAYQKE ESPAAKDAMA QILINSRMCA
EGHRPICQDT GIVTAFVNVG MDVRVEGDMS FDDIINEGVR RGYGLASNVL RASILDDPDG
ARKNTGDNTP AVIHYKMVPG NTIDIHVAAK GGGSEAKSKF AMLNPSDSVV DWVLKMVPTM
GAGWCPPGML GIGIGGTAEK AMLLAKESLL DPIDIQDLRE RGASNRAEEL RLELVDKVNA
LGIGAQGLGG LTTVLDIKVK DYPSHAANKA VAIIPNCAAT RHAHFVLDGS GPALQTPPSL
DDWPEVTWEV GDSVRRVNLD EVKKDDLLDW KPGETVLLSG KLLTGRDAAH KRLVDMINKG
EPMPVDFTNR FIYYVGPVDP VGDEVVGPAG PTTATRMDKF TATVLEKTGL IGMVGKAERG
PAGIEAIRNN KAVYLMAVGG AAYLVSKAIV ASKVLAFEDL GMEAIYEFEV KDMPVTVAVD
TNGEAVHETG PKIWKAKIEE QALSIK
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