| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0885 |
|---|
| Symbol | |
|---|
| ID | 3968819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1143788 |
|---|
| End bp | 1144369 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637919947 |
|---|
| Product | SecE subunit of protein translocation complex |
|---|
| Protein accession | YP_526359 |
|---|
| Protein GI | 90020532 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0605] Superoxide dismutase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000000000205445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000630572 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTTG AACTTCCTGC ATTGCCTTAT GCAAAAGACG CTCTAGCTCC ACACATTTCC
GAAGAAACTT TAGAGTTTCA CTACGGCAAA CATCATCAAA CCTACGTAGA TAAGCTAAAC
GGTTTGGTGC CAGGCTCAGA ATTTGAAGGC AAAACCTTAG AAGAAATTAT CAAAACTTCT
TCTGGTGGTG TATTTAATAA CGCTGCACAA ATTTGGAACC ACACCTTTTA CTGGAACTGC
TTAAGCCCTA ACGGCGGCGG CGAAGCGACT GGCGCAGTTG GTGAAGCAAT TGTTGCTGCT
TTTGGTTCTT TCGAAAAGTT TAAAGAAGAG TTCACTAACT CTGCAATTAA CAACTTTGGT
TCTGCATGGA CGTGGTTGGT GAAAAAAGCA GATGGCACTG TTGCTATTGT AAACACCTCT
AACGCCGCTA CGCCATTAAC TGATAGCAGT GTTACGCCAC TGTTGACTGT TGATGTTTGG
GAGCACGCTT ACTACATCGA TTACCGCAAC AGCCGTCCTA ACTACTTAGG TGCGTTCTGG
AAATTGGTTA ACTGGGACTT TGCTAACCAA AACTTCGCAT AA
|
|---|
| Protein sequence | MAFELPALPY AKDALAPHIS EETLEFHYGK HHQTYVDKLN GLVPGSEFEG KTLEEIIKTS
SGGVFNNAAQ IWNHTFYWNC LSPNGGGEAT GAVGEAIVAA FGSFEKFKEE FTNSAINNFG
SAWTWLVKKA DGTVAIVNTS NAATPLTDSS VTPLLTVDVW EHAYYIDYRN SRPNYLGAFW
KLVNWDFANQ NFA
|
|---|
| |