| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0863 |
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| Symbol | |
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| ID | 3965212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1119009 |
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| End bp | 1120730 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637919925 |
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| Product | type 4 fimbrial biogenesis protein PilB |
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| Protein accession | YP_526337 |
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| Protein GI | 90020510 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAGCC AAGCAATAGT ACTTAGCGGT CTAGCAAGGC GATTGGTAAG AGACAGCGTT
TTAAACGAAG AAGAAGCGAG GCTAGCCCTT GAAGAAGCAA CAAAAGCCAA GTTACCACTC
CCTATTTACC TTTCTCAAAA AAGTGGCATT AGCGCCCTCA CTATAGCCAC AGCAGCCTCG
GAAGAGTTCG GCACCCCCCT ATGCGATTTA CGAGCAGTTA GGAAAGACTC CATACCGGTT
GGCCTCGTCG ACAAAAAGCT AATAAGTAAA CATCACGCCC TTCCCCTTTT TAAACGTGGG
AACCGGCTAT TTGTAGCCCT AACAGATCCA ACCAATCTAC ATGCTATCGA TGAGATTAAA
TTCAATACAG GATTAACTAC AGAAGCAGTA CTTGCCGAAG CAGATATCTT AAACACCTAT
ATTGAAGCAT ATTTAAATGC AGAGGAAGAA AGCCTTAGCG ATTCATTAGG AGGCTTAGAC
GGTGACGGCT TGGACATTGA GGCCGTCGAC GAGGAAGGAA GAACACCAGG CGAAGACACC
TCTGAAATAG ATGAAACCCC TATTGTTCGG TTTGTAAACA AAGTGCTACT AGATGCCATT
AAAATAGGTG CTTCAGATAT TCACTTTGAG CCTTACGAGA AAACCTATCG GGTTCGATAT
AGAACAGACG GCATTCTCAA AGAAGTAGCC AGACCCCCAA CAAACCTAGC ACCAAGAATA
TCTGCACGAC TTAAAGTTAT GTCGCAAATG GACATATCTG AACGGCGGGT ACCCCAAGAT
GGCCGCATTA AAATGAAGCT CTCTAAAACG CGCGCCATCG ATTTTCGTGT AAACACTCTC
CCAACGCTTT TTGGCGAGAA AGTGGTGTTG CGGATCTTAG ACCCATCCAG TGCAAAGCTC
GGTATTGACG CTTTAGGCTA CGAAGATTTT CAGAAAAAGC TATTTATGGA TGCCCTCCAT
CAACCACAGG GCATGATTCT TGTTACTGGC CCAACCGGTT CAGGTAAAAC AGTATCTCTT
TATACGGGAC TGAATATACT AAACACCCCG GAACGAAACA TTTCTACCGC GGAAGACCCA
GTAGAAATCA ACCTTGAGGG TATTAACCAA GTAAACGTTA GTAATAAAGT TGGGCTAACA
TTTGCCGAAG CTTTACGCTC CTTTCTTCGT CAAGACCCTG ATATTGTGAT GGTGGGCGAG
ATACGCGACC TAGAAACAGC GGAAATTGGC ATTAAAGCAG CGCAAACAGG TCACTTAGTG
CTATCCACGC TTCACACCAA CAGTGCCGCT GAAACTTTAA CGCGCCTAAT GAACATGGGG
GTTCCTACGT TTAACGTGGC AACAACCGTA AGCCTGATTA TTGCCCAGCG TCTTGCTCGG
CGATTATGCT CTGAATGTAA GATACCCGCC GACGATATAA CTAACGAGGT ATTAACAGAA
GAAGGCTTCG ACGATATAGG TATAGATAGA AAAGATTTTC AACTTTTTCA CCCCAAAGGG
TGCGACAAAT GTAATAACGG CTATAAAGGC CGCGTAGGTA TTTATGAAGT TGTTCGCATT
ACCCCACAGA TATCTCGCAT TATAATGAGC GGTGGCAGCG CAATCGACAT AGCCGACGCA
GCAAAAGAAG CCGGCTTTTT TAACTTACGG GTTGCGGCAC TGCGCAAAGC GGCAACAGGC
CTAACCAGCT TAGAAGAAGC AAACCGAGTA ACCAAGGACT AA
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| Protein sequence | MGSQAIVLSG LARRLVRDSV LNEEEARLAL EEATKAKLPL PIYLSQKSGI SALTIATAAS
EEFGTPLCDL RAVRKDSIPV GLVDKKLISK HHALPLFKRG NRLFVALTDP TNLHAIDEIK
FNTGLTTEAV LAEADILNTY IEAYLNAEEE SLSDSLGGLD GDGLDIEAVD EEGRTPGEDT
SEIDETPIVR FVNKVLLDAI KIGASDIHFE PYEKTYRVRY RTDGILKEVA RPPTNLAPRI
SARLKVMSQM DISERRVPQD GRIKMKLSKT RAIDFRVNTL PTLFGEKVVL RILDPSSAKL
GIDALGYEDF QKKLFMDALH QPQGMILVTG PTGSGKTVSL YTGLNILNTP ERNISTAEDP
VEINLEGINQ VNVSNKVGLT FAEALRSFLR QDPDIVMVGE IRDLETAEIG IKAAQTGHLV
LSTLHTNSAA ETLTRLMNMG VPTFNVATTV SLIIAQRLAR RLCSECKIPA DDITNEVLTE
EGFDDIGIDR KDFQLFHPKG CDKCNNGYKG RVGIYEVVRI TPQISRIIMS GGSAIDIADA
AKEAGFFNLR VAALRKAATG LTSLEEANRV TKD
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