| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0858 |
|---|
| Symbol | |
|---|
| ID | 3965207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1115111 |
|---|
| End bp | 1116064 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637919920 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526332 |
|---|
| Protein GI | 90020505 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase
[COG1051] ADP-ribose pyrophosphatase |
|---|
| TIGRFAM ID | [TIGR00586] mutator mutT protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGTGTCA TAAAAGATGC TAGCGACAAC ATTTTGATTG CCAAGCGCCC CGAGCATGTT
CATATGGGCG GACGTTGGGA ATTCCCTGGC GGCAAAGTAG AGCGTAATGA ATCTGTAGCT
GCCGCGCTTG CTCGCGAGCT ACATGAAGAG CTGGGTATTG ATATAACCGG CGACTCGCGT
ATTACCCCTC TTATCACTAT TCGTCACCAA TATGCTGATA AAACCGTATT ACTCGATGTA
CGCATAGTAG AGCAATTTGG TGGTGAGCCA ACAGGTAAAG AGGGGCAGCC ATTGCGCTGG
GTTCCTGTTG CTAGCTTGCA AGACTATACC TTCCCTGATG CTAATTACCC CATTATTAGC
GCGCTCCAGT TGCCTCGTAT ACTCCCCATT TCGCCAGCCT TTTTAAGCCT TGCCGATTGC
GACGCTCTGA GTGAGTTTTA TGTGCAACAG CGATATACGC TCTGGCATAT GCGTTCGCCC
AATTGTGAGC GTGAAGTTTT TATCAAAGCG ATAAATCGCG CAGTTGAAAG TGTCGGCGTT
GAAGTAGGTA TTACGGTTAA TGCCTCTGTG GCAGAGTACG AGCGAGTTAA CGCCTTGCAT
TTACATTTAA ACTCGGCGCA GCTTTTGTCA TTAAAGGCGA GGCCGCAGCT TCGTTCGGGT
GGCTTACTTA GCGCTTCGTG CCATAACCTT GAAGAATTGA ACGCCGCTCA CAAGCTTGGA
GTGGAATACG TGCTCTTTTC GCCCGTGAAT GCTACAGCTT CGCATCCTAG TGCAAATGCT
GCAGGGTGGA GTGCTCTGCA AGCGTTTTGC GCTGCTGCGC GCGTACCGGT TTATGCGTTG
GGTGGAGTGG GGGAGTGTGA TGTAGGTAAG GCGATCGCTT GTGGCGCTCA GGGCGTCGCG
GGTATATCCG CTTTTAGCCC TTTAGCAAAT ATTGGTATTG GGCAGGGAGT CTAA
|
|---|
| Protein sequence | MGVIKDASDN ILIAKRPEHV HMGGRWEFPG GKVERNESVA AALARELHEE LGIDITGDSR
ITPLITIRHQ YADKTVLLDV RIVEQFGGEP TGKEGQPLRW VPVASLQDYT FPDANYPIIS
ALQLPRILPI SPAFLSLADC DALSEFYVQQ RYTLWHMRSP NCEREVFIKA INRAVESVGV
EVGITVNASV AEYERVNALH LHLNSAQLLS LKARPQLRSG GLLSASCHNL EELNAAHKLG
VEYVLFSPVN ATASHPSANA AGWSALQAFC AAARVPVYAL GGVGECDVGK AIACGAQGVA
GISAFSPLAN IGIGQGV
|
|---|
| |