| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0850 |
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| Symbol | |
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| ID | 3965199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1104079 |
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| End bp | 1105023 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637919912 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_526324 |
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| Protein GI | 90020497 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.868675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACGA CTTATGTAAA AAAGTTTGAT GGCAATACGG CTGCATTGGG TCGTACTTTG
GTGCTGTTTG GTGGCACGTC ATCTGAACGA GAGGTATCTC TGCGCAGCGG TGCTGCGGTG
CTACAAGCGC TGCAAGCGGG CGGCGTGGAC GCGCACGGTT TAGATGTGCA AGCCGATGCG
ATAGCGAAAA TTGAAGCGTT TGCTCCTGAC CGTGTATTTA TTGCTTTGCA TGGGCCCGGT
GGTGAAGACG GAAAAATGCA AGCAGTCTTA GACTGGTTGG CTATTCCTTA CACCGGTAGC
GATCACGCCG CTTCCGCTTT GGCGATGGAC AAATTAAAAA CCAAACAGGT TTGGCAAAGT
GTCGGTTTGG TAACGCCTGA ATACGCGTCG CTTGTAGAAA ATAGTGATTG GCAAGCGGTA
TTAGATTCTC TGGGAGGGCA AGGTTTTGTA AAGCCTGCAC ACGAGGGGTC GAGCATTGGC
ATGAGTGTGG TGAGCACAGC GCAGGAGCTA AAAGCCGCCT ACGAAAAAGC TGCTCACTAC
GACGCAAAGG TATTAGTTGA GCGTCGAATT GTTGGGCGAG AGTTTACCGT TGCGGTATTA
AACGGTGTTG CATTGCCGGC AATAGGATTA AAAACTGATC ACGTTTTTTA CGATTACGAC
GCAAAGTATG TGTCCAATAC CACTCAGTAT CTTTGCCCTT GTGGTCTTAC ACAAGAGAAA
GAAGCGGAGC TTCAATCTAT CGCTCAGCAA GCTTTCGCTG CCGTGGGATG TAAAGGTTGG
GGGCGCGTTG ATTTTATGCA GGATGAAGCA GGTAATTTTT ATTTGTTGGA AGTAAATACC
GTACCCGGTA TGACCGATCA CAGTTTGGTT CCAATGGCAG CTCGGCAGTC GGGTATAGAA
TTTAATGAAT TGGTTTTAGA AATTCTTGCG CAGACATTGG TATAA
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| Protein sequence | MTTTYVKKFD GNTAALGRTL VLFGGTSSER EVSLRSGAAV LQALQAGGVD AHGLDVQADA
IAKIEAFAPD RVFIALHGPG GEDGKMQAVL DWLAIPYTGS DHAASALAMD KLKTKQVWQS
VGLVTPEYAS LVENSDWQAV LDSLGGQGFV KPAHEGSSIG MSVVSTAQEL KAAYEKAAHY
DAKVLVERRI VGREFTVAVL NGVALPAIGL KTDHVFYDYD AKYVSNTTQY LCPCGLTQEK
EAELQSIAQQ AFAAVGCKGW GRVDFMQDEA GNFYLLEVNT VPGMTDHSLV PMAARQSGIE
FNELVLEILA QTLV
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