| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0843 |
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| Symbol | |
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| ID | 3965800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1094855 |
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| End bp | 1096411 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919905 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
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| Protein accession | YP_526317 |
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| Protein GI | 90020490 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATA TTGAAATCAC TATTGCGCAA TTACTTCAGG GTGTTTGGCT GGCCGAGGCG
CCGCTAGATG CGAGCGTTGC CAACATAAAA GTAAGTGGGG TGTCTTTAGA TAACCGTACT
TTAAGCGCTG GCAGCGTATT TATTGCTGTA CCTGGCGACA AAGTAGATGG ACGCGCTTTT
ATTGAAAAAT GTGACAGTGC AACCGCTGCA ATATTGGCAG AGGCAGATAC GTTCGGTGTC
GACTTAACTG GTGCTGTACC TGTGGTACAT ATTCCACAGT TAAAACAAAA AATAAGTCGG
GTGGCGGCTA ATTTTTATGG TCACCCTTCG CGCTCTTTAA CAATTATTGG CATTACTGGT
ACTAACGGTA AAACCACATG TGCCTATTTG CTCGCGCAAT TGTTAAGCAA ATTACAATTT
TCGTGCGGCA TGGTGGGCAC GCTAGGTTTC GCAAAGTTTG ATGAATGCGG TGCACCCGTT
AATTTGACTG ATACAGGCTT AACTACACCT TCTGCGCTAG ATTGCCAAAA AATTCTAGCT
GAACTACAGC AGCAGGTAGG TGCAGTGGCA ATGGAAGTGT CTTCTCACGG CTTGGCGCAA
GGGCGCGTGG CAGACGTGGA TTTTAATGGC GCAATTTTTA CCAATTTAAG TCGCGACCAT
TTGGATTACC ACGCAAGCCT CGAAGAATAT GCTGCCACCA AAGCTGCGTT ATTTGCGCGA
GAAGAGTTGA GCTTTGTAGT AATCAATGCC GATGACGCAG TGGGTGTGAA TATTTTAACT
AATGGCGTGG CGCCGCAAGC CATCACTTAT AGCTACAGTC TTGGCGGTGA GCAAGCTTTG
GTTGCTCAAA GTGAAAACAC AATTGTTGCT CACTCTATTG AATGGGGTTC TAGCCAAACC
GTCGCGCAGT TGCATACACC TTGGGGTGCA GCTGAATTAG CAACAGGGCT AGTTGGCCGA
TATAACTTAA GCAACGTGTT GGCTGTACTT ACAACAGCTT GTGCATTGGG TTATCCATTG
GTGGACGTGG TCGCACAGGT GAAGACTCTG CAAGCCGCGC CGGGTCGACT GCAGCGTGTA
AATAGCAGTG AGCAGCCATT GGCGGTATTT GTAGATTACG CGCACACGCC CGACGCACTT
GAAAAAGTAC TTAGCGAAGT GGCCGCATAT ACGCAAGGTA AGTTGTGGGT AGTGATAGGT
TGTGGTGGTA ATCGCGATGT AGGTAAACGT CCATTAATGG CAGAAGTGGC AGAGCGTTTA
GCTAATTGCG TGGTATTAAC ATCTGATAAC CCGCGCGATG AGAACCCAGA GCTTATTTTA
AAAGATATGC TTGCTGGCCT TAAAAACAAA GATGCGGCGA TGGTTATTGC TGATCGAAAA
AACGCAATCG AATACGCCGT CGCAAATGCA GCCGAAAACG ATGCGATTGT TATTGCGGGT
AAAGGCCACG AAAATTACCA GCTTGTCAAA GGAGAAAAAC TACCGTTTGA CGATGCATTA
ATAGCTAAAG AATTTTTAGC AGCCAAATGC TTTTCGCATG CGCGAGGTCA AGCGTAA
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| Protein sequence | MSDIEITIAQ LLQGVWLAEA PLDASVANIK VSGVSLDNRT LSAGSVFIAV PGDKVDGRAF
IEKCDSATAA ILAEADTFGV DLTGAVPVVH IPQLKQKISR VAANFYGHPS RSLTIIGITG
TNGKTTCAYL LAQLLSKLQF SCGMVGTLGF AKFDECGAPV NLTDTGLTTP SALDCQKILA
ELQQQVGAVA MEVSSHGLAQ GRVADVDFNG AIFTNLSRDH LDYHASLEEY AATKAALFAR
EELSFVVINA DDAVGVNILT NGVAPQAITY SYSLGGEQAL VAQSENTIVA HSIEWGSSQT
VAQLHTPWGA AELATGLVGR YNLSNVLAVL TTACALGYPL VDVVAQVKTL QAAPGRLQRV
NSSEQPLAVF VDYAHTPDAL EKVLSEVAAY TQGKLWVVIG CGGNRDVGKR PLMAEVAERL
ANCVVLTSDN PRDENPELIL KDMLAGLKNK DAAMVIADRK NAIEYAVANA AENDAIVIAG
KGHENYQLVK GEKLPFDDAL IAKEFLAAKC FSHARGQA
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