Gene Sde_0782 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0782 
Symbol 
ID3965835 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1011827 
End bp1012801 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content47% 
IMG OID637919844 
Productribosomal large subunit pseudouridine synthase F 
Protein accessionYP_526256 
Protein GI90020429 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.168526 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0685581 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGTTTG ACAGTGCAGT GAGATTAAAC AAGTTTATTA GCGATTCAGG CCACTGCTCA 
CGCAGAGAGG CAGATAAGCT AATAGCGAGT GATCGCGTAA AAATTAACGG CTTGCTGCCC
GAGTTGGGCG CTGTGGTAGA AAGTGGCGAC GTAGTAACCG TAGACGACCA GCCCCTTAGA
GCCAGCGCTG CCGATAAAAC CGACCGTATT TATATTGCTT ATAACAAACC ATTTGGTATT
ACCTGCACAA CAGATCAAAC CGTTAAGGGC AATATTGTTG ATGCCATAGA CCACGACGAG
CGCATATTCC CAATTGGCCG ATTAGATAAA CCTTCTGAAG GGTTAATTCT GCTAACCAGT
GACGGCGATA TAGTAAATAA AATATTGCGT GCAGAGAACG CACACGATAA AGAATATATT
GTTACGGTAA ATAAAAACCT CGCCCCCAAT TTTGCAGAGA AAATGTCTAG GGGTTTACCT
ATACTGGGCA CTATTACCAA ACCGTGTAAA GTACGCGTAA TAGGTAAAAC AACCTTTAAG
ATTATTCTTA CCCAAGGGCT TAACCGGCAA ATTCGACGCA TGTGCGACTA CCTAGGGTAC
GACGTAAAAC AGTTGGTACG CACGCGCATT ATGAATATAG AGCTGGGCAA ATTAAAGCCC
GGTCAGTGGC GCCGCCTTAC CAAGGTAGAA CTAGACCTAC TAACCAAAGC CACCAGCCAA
TCCAGCAAAA CCGCCATTAA AGGTGCGAAT GCAAAATCAA GCGCAAGCCC AACGGCAACA
AAACCTCGGG TAGCGAAACC CAAGGTAAAA AAAGAGCCGA AAGATTTAGA TAAACACGGC
CGCCCTAAAA ACAAAAGCAC GGGGGTAAAA CGCGGAGCTA AAAGTAAAAA CCTTACCACG
GGCGGTCGCA CTGGCAACAA GGGGGCCGGT CGCGGCAATG CAGGTCGCCC TACCGCACCG
CGTGGACGCA AATAA
 
Protein sequence
MTFDSAVRLN KFISDSGHCS RREADKLIAS DRVKINGLLP ELGAVVESGD VVTVDDQPLR 
ASAADKTDRI YIAYNKPFGI TCTTDQTVKG NIVDAIDHDE RIFPIGRLDK PSEGLILLTS
DGDIVNKILR AENAHDKEYI VTVNKNLAPN FAEKMSRGLP ILGTITKPCK VRVIGKTTFK
IILTQGLNRQ IRRMCDYLGY DVKQLVRTRI MNIELGKLKP GQWRRLTKVE LDLLTKATSQ
SSKTAIKGAN AKSSASPTAT KPRVAKPKVK KEPKDLDKHG RPKNKSTGVK RGAKSKNLTT
GGRTGNKGAG RGNAGRPTAP RGRK