Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0782 |
Symbol | |
ID | 3965835 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1011827 |
End bp | 1012801 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637919844 |
Product | ribosomal large subunit pseudouridine synthase F |
Protein accession | YP_526256 |
Protein GI | 90020429 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.168526 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0685581 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGTTTG ACAGTGCAGT GAGATTAAAC AAGTTTATTA GCGATTCAGG CCACTGCTCA CGCAGAGAGG CAGATAAGCT AATAGCGAGT GATCGCGTAA AAATTAACGG CTTGCTGCCC GAGTTGGGCG CTGTGGTAGA AAGTGGCGAC GTAGTAACCG TAGACGACCA GCCCCTTAGA GCCAGCGCTG CCGATAAAAC CGACCGTATT TATATTGCTT ATAACAAACC ATTTGGTATT ACCTGCACAA CAGATCAAAC CGTTAAGGGC AATATTGTTG ATGCCATAGA CCACGACGAG CGCATATTCC CAATTGGCCG ATTAGATAAA CCTTCTGAAG GGTTAATTCT GCTAACCAGT GACGGCGATA TAGTAAATAA AATATTGCGT GCAGAGAACG CACACGATAA AGAATATATT GTTACGGTAA ATAAAAACCT CGCCCCCAAT TTTGCAGAGA AAATGTCTAG GGGTTTACCT ATACTGGGCA CTATTACCAA ACCGTGTAAA GTACGCGTAA TAGGTAAAAC AACCTTTAAG ATTATTCTTA CCCAAGGGCT TAACCGGCAA ATTCGACGCA TGTGCGACTA CCTAGGGTAC GACGTAAAAC AGTTGGTACG CACGCGCATT ATGAATATAG AGCTGGGCAA ATTAAAGCCC GGTCAGTGGC GCCGCCTTAC CAAGGTAGAA CTAGACCTAC TAACCAAAGC CACCAGCCAA TCCAGCAAAA CCGCCATTAA AGGTGCGAAT GCAAAATCAA GCGCAAGCCC AACGGCAACA AAACCTCGGG TAGCGAAACC CAAGGTAAAA AAAGAGCCGA AAGATTTAGA TAAACACGGC CGCCCTAAAA ACAAAAGCAC GGGGGTAAAA CGCGGAGCTA AAAGTAAAAA CCTTACCACG GGCGGTCGCA CTGGCAACAA GGGGGCCGGT CGCGGCAATG CAGGTCGCCC TACCGCACCG CGTGGACGCA AATAA
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Protein sequence | MTFDSAVRLN KFISDSGHCS RREADKLIAS DRVKINGLLP ELGAVVESGD VVTVDDQPLR ASAADKTDRI YIAYNKPFGI TCTTDQTVKG NIVDAIDHDE RIFPIGRLDK PSEGLILLTS DGDIVNKILR AENAHDKEYI VTVNKNLAPN FAEKMSRGLP ILGTITKPCK VRVIGKTTFK IILTQGLNRQ IRRMCDYLGY DVKQLVRTRI MNIELGKLKP GQWRRLTKVE LDLLTKATSQ SSKTAIKGAN AKSSASPTAT KPRVAKPKVK KEPKDLDKHG RPKNKSTGVK RGAKSKNLTT GGRTGNKGAG RGNAGRPTAP RGRK
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