Gene Sde_0778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0778 
Symbol 
ID3965831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1003994 
End bp1006405 
Gene Length2412 bp 
Protein Length803 aa 
Translation table11 
GC content45% 
IMG OID637919840 
ProductAcetyl-CoA carboxylase, biotin carboxylase 
Protein accessionYP_526252 
Protein GI90020425 
COG category[S] Function unknown 
COG ID[COG3533] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.163489 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAAC AACCCTTTTT ACGTACTTTT GTTTTTGTAA TTACATTACA GGCATTTAGT 
TGGTGTAATG CTGCTGTAGC TTCTAAGCCG GTAGAGCTAT TCCCCCTTGC GGATGTACGA
TTATTAGATA GCCCTTTTAA GCATGCGCAA GACAAAAATG TAGAATATGT TTTGGCCCTA
CAGCCAGATA AATTATTGGC GCCATTTTTA AAAGAAGCTG GTTTGCCAGT AAAGGCAGAA
AATTACGGTA ACTGGGAATC GCAAGGCCTA GACGGTCATA TTGGGGGCCA TTATTTAACC
GCGTTAAGTT TGGCCTATGC CGCCACTGGC GATAAGCGTT TACTGGACCG CTTAAACTAT
ATGCTCAACG AGCTTGAACG CGCGCAAAAT AAAAATAGCA ATGGTTATAT TGGTGGCGTG
CGCAACGGCA AAGCGCTTTG GGATAATATT GCAAAGGGCG ACATTCGCGC AGATCTTTTT
GCACTTAACG ATTACTGGGT GCCTTGGTAT AACCTGCATA AAATATACGC GGGCTTAAGA
GATGCTTATA TCTATACCGG CAGCGAGCAA GCCAAAGCGA TGCTCATTGG CTTGGGCGAA
TGGACTATAG CGCTTACTGC CGATTTAAAC GATGAGCAGA TAGAAAAAAT GTTAACCACT
GAGTACGGTG GTATGAACGA AGTGTTTGCC GATATGGCCG CTATTACCGG CGATAAACGC
TACCTTAGTT TGGCCAAACA ATTTTCCCAT AAAAAAATTC TTAACCCACT TCTACAAAAG
CGCGATGCAC TTAATGGATT GCACGCAAAC ACACAAATTC CCAAGGTGGT TGGCTATCAG
CGGGTGGCAG AGCTAACGGG CGATGAAGAA TGGCATAAAG CTGCAGATTA TTTCTGGCAT
CACGTCGTAA ACAACCGCAC TGTCGCTATT GGCGGCAACA GTGTGCGCGA GCATTTTCAC
GATAGCGAAG ACTTCGCCCC AATGATAAAC GATGTTGAGG GGCCAGAAAC CTGCAACACT
TATAATATGC TGAAACTATC GCGCATGTTG TTTAGCGTTA ACCCCAGCGT AGATTATGTA
GATTACTTTG AGCGGGCGCT GTACAACCAT ATATTATCGT CGCAGCACCC TGAAACGGGT
GGCTTGGTGT ACTTTACGCC AATGCGCCCG CAGCACTATC GTATGTATTC CCAGGTGGAC
ACTGCAATGT GGTGTTGTGT TGGCTCAGGT ATAGAAAATC ATGTTAAGTA CGGTGAGTTT
ATTTATGCCA AGCAAAACAA TAACCTTTAC GTAAATCTAT TCATTGCTTC CACATTGGTG
TGGCAAGAAA AGGGTGTGCA CTTAACACAA GAGAACACCT TCCCAGATAG CAATCGCACC
ACGCTAACCG TGGCGCTAGA CAGCAAAGTA AAATCCTCCA AAAAACACGC AAAGTTTACG
ATGCATATTC GTTACCCGCG CTGGGCGCAA GCCGGTAAAG TGGTTGTTAA AGTAAACGGC
AAGCCAATAA ATGTAAAAGC AAAAGCTGGC GAATATATTG AAATTAATCG CCGCTGGCAC
AATGGCGATA ACGTAGAGTT AAGTTTGCCT ATGAATATTG CGTTGGAGGC GCTACCCGAT
CAATCAGATT ACTATGCCGT ACTTTACGGC CCCATTGTAT TGGCGGCCAA AACTCAGCCT
TTTAAAAATG AACAATTGAA TGTTTTTGCC GACGAAAGCC GCATGGGGCA TATAGCCCAA
GCGCAAATGT GTTCATTAGA CGCCGCCCCA ATTTTTGTGA GCGACAGCAG GGATTTTATA
AATAAAATAA AGCGAATAAA TAGCGAGCAG CTAGTATTTA AAACGCAAGG CCTTATTCAA
CCGGCTGCGC TTAGCCAGGT AGAACTTATT CCGTTCTTTA GGTTGCACGA TAGCCGCTAT
ATGCTTTATT GGCCATACAG CTCGCCAGAT GATTTGCAAA AACGCCAGCA ATTGCAGGCG
CAGGTAGAAG CAGAAAAACT GGCGTTAGCG CAACAAACCA TTGATAAAGT TGCACCTGGT
GAGCAACAGC CGGAATCGGA TCACTTTTTT AAAGGTGAGG CAACCGAGGC TGGCGTACAC
AGTGGCAAAC ACTGGCGTCA TGCACACCGT TGGTTTAGTT TTCAGCTTAA CGACCCAAAT
AAAGAGGGTA AAATATTGCG TATTACCTAC TATGGTTTAG ATGCAGGGCG TAGCTTTAGT
ATTTGGCTAG ATGATATAAA AGTAGCTGAC GTAACACTTA ATGGCGATAA GGGCGACGCT
TTTTATAGTG TCGACTACAT GGTGCCTAAG CGTGTGCTTG CTCAAGCGAA AGCTGGCAAG
TATCGCGTAA AATTCCAAGC CGAAGAGGGC AGCGTAGCGG GTGGTGTCTA CGGTGTTAGG
TTAATGCGCT AG
 
Protein sequence
MIKQPFLRTF VFVITLQAFS WCNAAVASKP VELFPLADVR LLDSPFKHAQ DKNVEYVLAL 
QPDKLLAPFL KEAGLPVKAE NYGNWESQGL DGHIGGHYLT ALSLAYAATG DKRLLDRLNY
MLNELERAQN KNSNGYIGGV RNGKALWDNI AKGDIRADLF ALNDYWVPWY NLHKIYAGLR
DAYIYTGSEQ AKAMLIGLGE WTIALTADLN DEQIEKMLTT EYGGMNEVFA DMAAITGDKR
YLSLAKQFSH KKILNPLLQK RDALNGLHAN TQIPKVVGYQ RVAELTGDEE WHKAADYFWH
HVVNNRTVAI GGNSVREHFH DSEDFAPMIN DVEGPETCNT YNMLKLSRML FSVNPSVDYV
DYFERALYNH ILSSQHPETG GLVYFTPMRP QHYRMYSQVD TAMWCCVGSG IENHVKYGEF
IYAKQNNNLY VNLFIASTLV WQEKGVHLTQ ENTFPDSNRT TLTVALDSKV KSSKKHAKFT
MHIRYPRWAQ AGKVVVKVNG KPINVKAKAG EYIEINRRWH NGDNVELSLP MNIALEALPD
QSDYYAVLYG PIVLAAKTQP FKNEQLNVFA DESRMGHIAQ AQMCSLDAAP IFVSDSRDFI
NKIKRINSEQ LVFKTQGLIQ PAALSQVELI PFFRLHDSRY MLYWPYSSPD DLQKRQQLQA
QVEAEKLALA QQTIDKVAPG EQQPESDHFF KGEATEAGVH SGKHWRHAHR WFSFQLNDPN
KEGKILRITY YGLDAGRSFS IWLDDIKVAD VTLNGDKGDA FYSVDYMVPK RVLAQAKAGK
YRVKFQAEEG SVAGGVYGVR LMR