Gene Sde_0774 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0774 
Symbol 
ID3965827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp998716 
End bp1000218 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content46% 
IMG OID637919836 
ProductL-arabinose isomerase 
Protein accessionYP_526248 
Protein GI90020421 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2160] L-arabinose isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.031491 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0818763 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATTT ACGGCGAGAA AAAAATTTGG TTTGTAACAG GTTCGCAGCA TCTCTACGGC 
CCAGGTGTAT TGGCACAAGT AGCAGAAAAT AGCCAAGCCA TTGCGGCAGG TTTAACTGCC
TCCGAGCATG TTTCTGCCAA CATCGAATCG CGCGGTGTAG TTACAACGCC AAAAGAAATT
TTGGATGTAT GCCAAGCGGC TAACAGCGAT GAAAATTGTG TGGGCCTCAT TTTGTGGATG
CATACATTTT CGCCAGCAAA AATGTGGATA GCTGGTTTAA GTGCACTCAA CAAGCCTTAT
ATGCATTTAC ATACCCAGTT TGGCGCAGCA TTGCCCTGGG GCGACATAAA CATGAACTAT
ATGAACCTTA ATCAAAGCGC CCACGGCGAC CGCGAATTTG GTTACATTGG CACTCGTTTG
CGTCAAGAGC GCAAAGTAGT TGTTGGCCAC TGGCAAAAAG AAAGCGTGCA AATACAAGTA
GACGATTGGG TGCGTGCGGC AATGGGCTGG GCGGAATCGC AAACCCTTAA AGTGGCTCGC
TTTGGCGATA ACATGCGTCA AGTTGCTGTA ACTGAAGGCG ACAAGGTATC TGCTCAAATT
CAGTTTGGCT ACGAAGTGCA TGCTTTCGGT TTGGGCGATT TAGCAAAAGC GTGTGAGAAA
ATTACTGCAG AGCAAATTAC TGCGCAGTTA GAACTATACA AGCAAGATTA CGAAATAGAT
GCAGATGTAT TTACCGACGT ACACAGTTTA GAAATGCTGC AAAACGAAGC GCGTTTAGAG
CTGGGTATGG AAGCGTTTCT AGAAGAAGGC AACTTTAAAG CCTTTACCAA CTGTTTTGAA
AACTTGACCG GCTTATCGGG TTTGCCAGGT TTGGCTACCC AGCGATTAAT GAGCAAAGGC
TATGGCTACG GTGGTGAAGG CGACTGGAAA ACCGCTGCAA TGTGTCGCAT TGTAAAAGTG
ATGAGCTTGG GTAAGGCTGC AGGCACATCT TTTATGGAAG ATTACACCTA CAATTTCGGC
GACCCAGATC AAGTATTGGG TGCGCATATG TTGGAAGTGT GCCCAAGTAT TTCCAACGAG
AAGCCCAAGG TTGTGGTAGA GCGTCACACC ATTGGTATTA AGAAAGATAT CGCCCGCTTA
ATCTTTACCG GCACCCCTGG CCCTGCTATC AATATTTCTA CCATCGATAT GGGCACACGG
TTCCGTATTA TTGCCAACGA AGTAGATACC GTAAAACCAC CGCAGGATTT GCCAAACCTG
CCTGTTGCAA AAGCACTGTG GGAGCCGCGT CCAAGCCTAG AGGTTGCTGC AGCCGCGTGG
ATTCACGCTG GTGGCGCACA TCACAGCGTT TACACACAAG GTATTAACCT AGATCAGCTA
AATGATTTTG CCGAAATGGC CGGTGTAGAA ATGGTTGTAA TCGGTGCCGA TACCAACGTT
AACGAATTCA AAAAAGAATT GCGTTTTAAC GCTGTGTACT ATCATTTAAG TCACGGTATC
TAA
 
Protein sequence
MKIYGEKKIW FVTGSQHLYG PGVLAQVAEN SQAIAAGLTA SEHVSANIES RGVVTTPKEI 
LDVCQAANSD ENCVGLILWM HTFSPAKMWI AGLSALNKPY MHLHTQFGAA LPWGDINMNY
MNLNQSAHGD REFGYIGTRL RQERKVVVGH WQKESVQIQV DDWVRAAMGW AESQTLKVAR
FGDNMRQVAV TEGDKVSAQI QFGYEVHAFG LGDLAKACEK ITAEQITAQL ELYKQDYEID
ADVFTDVHSL EMLQNEARLE LGMEAFLEEG NFKAFTNCFE NLTGLSGLPG LATQRLMSKG
YGYGGEGDWK TAAMCRIVKV MSLGKAAGTS FMEDYTYNFG DPDQVLGAHM LEVCPSISNE
KPKVVVERHT IGIKKDIARL IFTGTPGPAI NISTIDMGTR FRIIANEVDT VKPPQDLPNL
PVAKALWEPR PSLEVAAAAW IHAGGAHHSV YTQGINLDQL NDFAEMAGVE MVVIGADTNV
NEFKKELRFN AVYYHLSHGI