| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0772 |
|---|
| Symbol | |
|---|
| ID | 3965825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 996263 |
|---|
| End bp | 997930 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637919834 |
|---|
| Product | ribulokinase |
|---|
| Protein accession | YP_526246 |
|---|
| Protein GI | 90020419 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1069] Ribulose kinase |
|---|
| TIGRFAM ID | [TIGR01234] L-ribulokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000289465 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0721691 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCTT ATGCTTTGGG CCTCGATTAC GGCTCAGACT CTGTTAGAGC TCTTCTGGTA
GATACCGCTA CTGGCAGCGA AGTGGCAACA GCTACAGTGT TGTACCCGCG TTGGGCGAAA
GGGTTGTACT GCAATCCCAG CGCCGATCAA TTTCGCCAGC ACCCGTTAGA TTATTTAGAG
TCATTAGAAA CTGTACTGGC TGATTTGTGG CAGGCGGCTC CCGCTGGCGC TGCTCAACAT
GTGGTTGGAA TCGCATTTGA TACAACCGGT TCTACGCCTA TAGCAATCGA CAGCGAAGGC
CAAGCGCTGG CATTAAAGCC AGAATTTGCC AGCAACCCCA ACGCGATGTT CGTATTGTGG
AAAGATCACA CCGCAGTAAA AGAAGCGCAG CAAATTACTG CCGCAGCACA AGCGGCTAGC
GAAAACTACC TTAAATACGA AGGTGGTATT TACTCTTCCG AATGGTTTTG GGCCAAAGCA
TTACACGTGC TGCGCGCCGA CCCTGCGGTG CGGGATGCCG CCTACAGCTG GGTAGAGCAC
TGCGACTGGA TGCCGGCTGT GTTAACGGGC ACGACGCATC CAAGCAAGTT GCGAATAGGC
CGCTGCGCCG CCGGTCACAA AATGATGTGG CACGAAAGCT GGGGTGGTTT TCCGCCCAAT
GGTTTTTTCA AAGCGCTCGA CCCGGTATTA GATGGCTTGC GCGATACATT GCCTGCTCAA
ACTTATACCT CCGATCAAAG CGTAGGCGCA TTAACTGCAG AGTGGGCTAC CAAGCTGGGG
CTACCAGCTG GAATTGCCGT GGGCTTTGGT GCATTTGATT GCCATATGGG CGCTGTGGCT
GCACGGGTTA AACCAGGCGT GCTAACCAAA ATTATGGGTA CGTCTACCTG CGACATTACT
GTAGCTACCT ACCAAGAAAT GGCCGATACC TGTGCGCGTG GCATTTGCGG TCAAGTAGAT
GGTTCTGTAT TGCCTGGCAT GGTGGGCCTA GAGGCGGGTC AGTCTGCCTT TGGTGATTTG
TACGCATGGT TCCGCAATTT AATTAACTGG CCGCTGCAAA ACATTGCGCT TAGCCAAACC
GTGTTAGACG ACACTACTCG CCAAGCGCTA ATTAAAGAAA TTGAAGATAA AACCTTAATA
GCCCTAAGCG ACGAAGCGGC CAAGTTGGCG CCGGGCCAAG CGAGTATTAC TGCGCTGGAT
TGGGTTAACG GTCGTCGCAC TCCCGATGCC GACCAAACCG TGGCTATGGC CATTGCCGGT
TTAAAAATGG GCAGTCAAGC GCCGCAGGTA TTTCGCGGCT TGGTAGAAGC TACCGCATTC
GGTGCGCGCG CAATTATCGA ACGCTTTCGC GCAGAAGGTG TGCGGGTTGA TTCTGTTGTC
GCTATTGGCG GTATTTCTAA AAAGTCTGAT TTGGTAATGC AAATTTGCGC CGATGTATGG
GGCTGCCCCA TCGATGTATT AGAAAGCGAT CAAAGTTGTG CGCTAGGTGC TGCTATTTTT
GCTGCCACTG CTGCGGGTGT TTACCCCAAT GTGGCGGCGG CGCAAGAAGT AATGGCGTCG
TCTGTATGCA AAACCTATAC GCCTAATAGT GATACAGCCG CAACGTACAA CGCACTTTAT
CAAAACTATT TAGCCCTAGG GGCATTCGTA AACGGAGAAG CAAAGTGA
|
|---|
| Protein sequence | MVSYALGLDY GSDSVRALLV DTATGSEVAT ATVLYPRWAK GLYCNPSADQ FRQHPLDYLE
SLETVLADLW QAAPAGAAQH VVGIAFDTTG STPIAIDSEG QALALKPEFA SNPNAMFVLW
KDHTAVKEAQ QITAAAQAAS ENYLKYEGGI YSSEWFWAKA LHVLRADPAV RDAAYSWVEH
CDWMPAVLTG TTHPSKLRIG RCAAGHKMMW HESWGGFPPN GFFKALDPVL DGLRDTLPAQ
TYTSDQSVGA LTAEWATKLG LPAGIAVGFG AFDCHMGAVA ARVKPGVLTK IMGTSTCDIT
VATYQEMADT CARGICGQVD GSVLPGMVGL EAGQSAFGDL YAWFRNLINW PLQNIALSQT
VLDDTTRQAL IKEIEDKTLI ALSDEAAKLA PGQASITALD WVNGRRTPDA DQTVAMAIAG
LKMGSQAPQV FRGLVEATAF GARAIIERFR AEGVRVDSVV AIGGISKKSD LVMQICADVW
GCPIDVLESD QSCALGAAIF AATAAGVYPN VAAAQEVMAS SVCKTYTPNS DTAATYNALY
QNYLALGAFV NGEAK
|
|---|
| |