Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0717 |
Symbol | dnaG |
ID | 3965277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 927937 |
End bp | 929907 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637919779 |
Product | DNA primase |
Protein accession | YP_526191 |
Protein GI | 90020364 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.261682 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCGCA TCCCGCAATC CTTTATCGAC GACCTTCTTA ATCGCCTCGA CATAGTCGAA GTGATAGATC ATCGCGTAAA GCTAAAAAAA GCGGGCAAAA ACTACTCGGC ATGCTGCCCT TTTCACGAAG AAAAAACCCC CTCGTTTACC GTAAGCCCCG ATAAACAGTT CTACTACTGC TTTGGCTGTG GCGCCAATGG CAATGCTGTT GGCTTTTTAA TGGAATACGA GCGCCAAGGG TTTGTAGATG CAGTAGAAAG CCTCGCCCGC GTTGCGGGCA TGCAAGTACC CAAAGAAACC ACCGAAAAAG ACGTAAAGCA CGCAAAAAAA CAACGCGGCC TATACGACAT ACTGGGTTTA GCCAGCACCT ACTACCAAAA ACAACTTAAA GAACACTCCA GCCGCGAACG CGCCGTAAGC TACCTTAAAG GCCGCGGCTT ATCTGGCGCT ATTGCACGCG ATTTTGGCAT GGGCTACGCC CCACCCGGCT GGGATAACCT ACTAGTAAAA CTGGGCACCA ACGAAGAAGA TCGCCACCTA CTAGTAGAAA GCGGCTTAGT TATTCGCAAA GAAGGCGAAG GCAAACTGTA CGACCGCTTC CGCCACCGCA TAATGTTCCC CATTAAAGAT ACCCGCGGCC GCGTAATAGG CTTTGGCGGG CGCGTATTGG GCGACGACAA ACCCAAATAC CTCAACTCGC CAGAAACCCC GGTGTTTTCG AAGGGGCGCG AACTATACGG CTTATACGAA GCGCGCCAAA GCAACCGCAA ATTAGAACGG CTGCTAGTGG TAGAAGGCTA TATGGATGTA ATAGCCCTCG CCCAATACGG CATGCGCAAC GCCGTAGCCA CACTGGGCAC CGCCTGCGGT GAAGACCACC TAAAACTAGC CTTTCGCTAT GTAAACGAAG TGGTATTTTG CTTTGATGGC GACAACGCCG GCCGCACCGC CGCCAAACGC GCATTGGTGA ACGCGCTACC CGCCATGGAA GACGGCCGCC AAATACGCTT TTTGTTTTTA CCCGAAGGCC AAGACCCAGA CACCCTAGTA CGCCAAATAG GCGCCGAGCG CTTTACCGCA CAAATAGAAA ACGGCGTACC CCTAGAAGAA TTTTTATTCG ATGCCGTAGC CGAAGGCATA GATGTAAACA GCATGGAAGG CCGCGCCCGC TTCGGCAAAC TGGCCGCGCC ACTACTAAAC ACCCTGCCCA ACGGCATTTA TCGCGAATTA ATGTTTGCCA ACCTGGCCAA GCGCACCGGC CTAAGCCTAG ACTTGCTACT AGAACTAACC AAAGAAAAAG TAAGCCTAGT TGCCGAGCCT GCAAAGCCCG ACCCAAGCCA GCAGCCGCAG CCCGAACCCG AACTGCCAGC GCACTTGGGC GCCAACATTG GCACTAGCAT AAGCGCCAGC ACGCCGCCCC ATATAGACGA AAGCTACGCG CATATTCCAC CGCTAGAGCC AGATTACGTC GCCCGCACAG CGCAAACCAG CGCCCCAAAA TCCGCGCCCG TTAAGCGCTC ATCCATAACG CTTAACCCTG TAAGGCTTTG CACCATACTG CTACTGGAAT ACCCCAAGCT GGTAGCTACA CTTAACAACA TTCCAGCGCG CGCCGAAACC GAAGACGAAG AGCTAACAAG GCTTTTTGAC CTAATTGAAT ACATACAGCA GCGCCCAAAC TGCAGCTTTA ACAGCATATT GGGTTACTGG GGCGGTCGCT ACGGCATAGA ACAACAACAA GCCCTCGCCG ACCTAGTAGC AAACCAGCTT ATGGGCAGCG TGCGCAGTGT AGAAAACTAC AACCCAGAAC AAGAACTGGA ACAAAGCCTG GCCCGAATTG GTCAAAAACT ACAAAAAGCC AACAACCAAA AAGAATTGGC CAAATTACAA GCCAAGGGCC TAGGCAACCT AAATAACGAA GAAAAAGAAC GCTTTCGCGA GCTAGTGCGT CTTCAACACC AACAAACATA A
|
Protein sequence | MSRIPQSFID DLLNRLDIVE VIDHRVKLKK AGKNYSACCP FHEEKTPSFT VSPDKQFYYC FGCGANGNAV GFLMEYERQG FVDAVESLAR VAGMQVPKET TEKDVKHAKK QRGLYDILGL ASTYYQKQLK EHSSRERAVS YLKGRGLSGA IARDFGMGYA PPGWDNLLVK LGTNEEDRHL LVESGLVIRK EGEGKLYDRF RHRIMFPIKD TRGRVIGFGG RVLGDDKPKY LNSPETPVFS KGRELYGLYE ARQSNRKLER LLVVEGYMDV IALAQYGMRN AVATLGTACG EDHLKLAFRY VNEVVFCFDG DNAGRTAAKR ALVNALPAME DGRQIRFLFL PEGQDPDTLV RQIGAERFTA QIENGVPLEE FLFDAVAEGI DVNSMEGRAR FGKLAAPLLN TLPNGIYREL MFANLAKRTG LSLDLLLELT KEKVSLVAEP AKPDPSQQPQ PEPELPAHLG ANIGTSISAS TPPHIDESYA HIPPLEPDYV ARTAQTSAPK SAPVKRSSIT LNPVRLCTIL LLEYPKLVAT LNNIPARAET EDEELTRLFD LIEYIQQRPN CSFNSILGYW GGRYGIEQQQ ALADLVANQL MGSVRSVENY NPEQELEQSL ARIGQKLQKA NNQKELAKLQ AKGLGNLNNE EKERFRELVR LQHQQT
|
| |