Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0716 |
Symbol | |
ID | 3965275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 925981 |
End bp | 927822 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637919777 |
Product | Fis family transcriptional regulator |
Protein accession | YP_526190 |
Protein GI | 90020363 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000378476 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAC AGGCGAAAAA GCAGTCCCGC ATCAAAGAAT TGATCAACCG CGGCCGAGAA CAGGGCTATC TCACCTACGA TGAAGTAAAC GATCATCTAC CCGACGATAT TTCTGATCCC GATCAGGTTG AAGACATCAT CCAAATGATT AACGACATGG GTATTCGCGT GTACGAAGTT GCACCCGATG CCGATGAGCT GTTAATGACC GATGGCGATT CTTCCGCGGA CGAAATAGCA GCAGCAGAAG CTGCCGCAGC ACTGGCGGCG GTAGAAACCG AAGCTGGTCG CACCACAGAC CCTGTGCGTA TGTATATGCG CGAAATGGGA ACAGTAGAGC TGCTTACTCG CGAAGGCGAA ATAGCAATTG CCAAACGCAT AGAAGAAGGC CTGCGCGAAC TAAACCACGC CATCGCCCTT TGGCCAGAGG CAGTACAGCA ATACGTAAAC GAATACGATC TAGTCGAAAA AGAAGAGCGC CGCCTAGCAG ACGTCATTAG CGGCTGGCTC GACCCCGCCG AAGACGTAGC CCCCCCCGTT GTAGCCGCCG AAACCGCAGA AGACACCGAT TCCGACGATG ATGATGACGA CGATGACGAT ACCGACACCG AGGACGAAGA AGAGTCCACC GGTATCGACC CCGAATACGC ACGCGAGCGC TTCGACGAGC TAAAAGCCGC CCTGCTTAAA GTAGAAAAAG CCATTGCCAA GCACGGCTTC GAAAGCAAAG CAGCAGGCAA AGAAATGGAA GCGTTGGGCG AAATATTCAA ATATTTCAAA CTGCCACCGC GCCAGTTCGA CCCTATTTAC CAAGGTATTC GTCAAATACT TACCCGCGTA CGTGCAGAAG AGCGTGAAAT TATGCGCTTG TGTACCCGCC TAGGTGGTAT GCCACGCAAA ACCTTCATGA AAGAATTCCC CGGCCAAGAA ACCGATGAAG ATTGGATTCC AGCTACCATT GGCAAAGGCC GCGACTACTC CGATTCGCTA AAGCCCTACG CAGAGGACAT TATTCGTGCG CAGCGTAAAC TTAAGCAAAT TCAAGAAGAG TCTGGCTTAA GCCTTGGCCA CATTAAAGAA ATTAACCGTC GCATGTCCAT TGGCGAAGCC CGTGCACGTC GCGCTAAGAA GGAAATGGTA GAAGCCAACC TTCGCTTGGT AATTTCTATT GCTAAAAAAT ACACCAACCG CGGTTTGCAG TTCTTAGATC TTATCCAAGA AGGCAACATC GGCCTAATGA AGGCCGTAGA TAAATTCGAA TACCGTCGCG GTTACAAGTT CTCTACCTAC GCCACTTGGT GGATTCGTCA GGCCATTACC CGCTCTATTG CGGATCAGGC CCGCACTATC CGTATTCCAG TGCACATGAT AGAGACCATA AACAAACTAA ACCGTATCTC TCGTCAAATG CTTCAAGAAA TGGGCCGCGA GCCCACACCA GAAGAGCTAG GCGAGCGCAT GGAAATGCCA GAAGATAAAG TTCGCAAGGT ACTTAAAATT GCCAAAGAAC CTATCTCTAT GGAAACCCCA ATTGGCGACG ATGAAGATTC CCACCTAGGC GACTTCATTG AAGACACCAC CATCGACTCA CCCGTCGATT CTGCCACCAT CCAAGGCCTA ACAGAAGCCA CTCGCTCGGT ACTTGCAGGC CTAACCGCCC GCGAAGCAAA AGTACTAAGA ATGCGCTTTG GTATAGATAT GAATACCGAC CACACCTTGG AAGAAGTGGG CAAACAATTT GACGTAACCC GTGAGCGTAT CCGTCAAATT GAAGCCAAAG CCCTGCGCAA ACTGCGTCAC CCTAGCCGCT CTGACCACTT GCGCGGCTTC CTAGACGACT AG
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Protein sequence | MSEQAKKQSR IKELINRGRE QGYLTYDEVN DHLPDDISDP DQVEDIIQMI NDMGIRVYEV APDADELLMT DGDSSADEIA AAEAAAALAA VETEAGRTTD PVRMYMREMG TVELLTREGE IAIAKRIEEG LRELNHAIAL WPEAVQQYVN EYDLVEKEER RLADVISGWL DPAEDVAPPV VAAETAEDTD SDDDDDDDDD TDTEDEEEST GIDPEYARER FDELKAALLK VEKAIAKHGF ESKAAGKEME ALGEIFKYFK LPPRQFDPIY QGIRQILTRV RAEEREIMRL CTRLGGMPRK TFMKEFPGQE TDEDWIPATI GKGRDYSDSL KPYAEDIIRA QRKLKQIQEE SGLSLGHIKE INRRMSIGEA RARRAKKEMV EANLRLVISI AKKYTNRGLQ FLDLIQEGNI GLMKAVDKFE YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI NKLNRISRQM LQEMGREPTP EELGERMEMP EDKVRKVLKI AKEPISMETP IGDDEDSHLG DFIEDTTIDS PVDSATIQGL TEATRSVLAG LTAREAKVLR MRFGIDMNTD HTLEEVGKQF DVTRERIRQI EAKALRKLRH PSRSDHLRGF LDD
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