| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0662 |
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| Symbol | |
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| ID | 3967636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 841917 |
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| End bp | 844673 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919723 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_526136 |
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| Protein GI | 90020309 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0359693 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGGTG ACCGGAGGCG CGGCTTGATA GACGCATTGT TACAATTTTT TAGCGAAGAA
TATATGCCCC ACGGGCATTG CTACTTATGG CGCCCAGATA TTCTTTGGAC ACATGTCGTA
TCCGATAGTG TGATTGCGAT CGCTTATTTC AGTATCCCGT TGGGTTTGGT GTACCTTAAA
AAGAAACGCT CAGACATTCA ATTTAGTTGG CTGTTGGTAC TCTTCTCGTC GTTTATTTTG
TTGTGTGGCC TTACTCACGT TTACAGTATT TACAATATTT GGGTGGGTAG TTACGGCGGC
CAAGGTGTGC TTAAAGCTAT TACCGCGCTG GCATCAATAG GTACTGCGTT TGCGCTTATT
CATGTTCTAC CGAAAGTCGC CACCATTCCC ACAACAGAAG AGCTTGCAGA GGCGCGTGAA
AGCGCTAGCC AAGAAACAAT TCGCCGAATT CAATTAGAAG CGGCACACCG AGAAGAAGCG
CATTTGCGCG AAGCAACCAA TGCTTCACCT GTAGGGTTAT TGGTGTCCGA TGAGCGAGGG
AATATAACTC TTGCCAACAA CGCTCTCGCA GAGCTGTTTG GCTACGACGC AAGTGAGCTG
AATGGTCAAT CTATTAATAT GCTAATTGAT GCAGAGACGA GTCAGCATCA CGGCAAATTG
GTAGGTCAAT TCCTCGAATC CGAAGAAACA AGTCGTGTAA TGGCGTCGGG GCGTGTTGTT
TCGGGCGTAC GTAAAGATGG TGCCAAAATA CCCGTAGATA TTCGCCTAGC GAAGCGAGAA
TCGGAGGGCG AAGTACGCAT TTTTGCTGCT GTTACCGATC TATCAGAAAA GCTGGCTGCG
CAGGAGGAGA TCCGCGAAGC CAATATGCGT TTTGAGCGCA TCACCAAAGC CACCCAAGAA
GGCTTGTGGG AATGGAATAT CGAGACTAAT ACTATGTGGT GGTCGACAGT TGCATGGCAG
CTACTTGGCT ATAACGAGAC CAGCAGTCAC GCTTCAATGG ACCAATGGTT AACCCATTTA
CGCAGCGATT TTCGTCATTC CATTAACGCG GCATTGCAGG ATCATTTGCA GCGGGGCCTG
CCATTTGACG AAGAGTGCGT CGTAACAACA TTGAGTGGTG AAGAGCGCTG GATTCACATT
TTTGGCAACA GTGTATACGA TAAGTCTGGG CAGCCGATTG TTATGTCTGG GGCCATGCAG
GATATTCAGC TGCGCAAAGA CATGGAGCTA GTACTGCGAG AAAAATCACA ATTCTTAGAA
TCTATTTTTC AGGGTACGTC TTACAGTGTA TTTGTGCTCG ATGCGGATAA ACAAGGCACG
TTGCGGTATT CTGCTTTTAA TAACGCGGTG GAGCAGCTAA CAGGGATTGC CGCCGCCGAG
TGCTTAGGTA AAACGCCTCT CGATTTGGCG CCTGATTATG TGCCAGAAAA AACTGCGCAA
GAAATACAAT CGCGCTACAA CCTGTGCTAT ATGAGTAAGC GTCCAAGCAG TTATGTTGAG
ACGATAGAAT TTAAGGGGCG TGTCACCTGG TGGAAAACAG CATTATTTCC CTTGTTAGAT
AATGAAAATA GGGTTTACCG CATAATTGGC TCGTCTACAG ATATCACAGA TTTAAAACAT
GCAGAGCAAA AGTTAACTGA ACGCGAATCG TTTTTAAAAA ATGTGGTCGA TCTGTCAATT
AGTGGTTTGT ATATCTTTAA TTTAAAAACC AATGTCAATA CTTTTATCAA CAATCAGTAC
ACCCGTATTA CGGGTTATAC ATTGGAGGAT TTACGTTCTA AATCCGATTT AATGCAATAC
TTTCATTCTG AAGAACAACA GTTAATCATT GATCATATAG AGCGAGTGAT TGTAAGTCGT
GAAGGTGAAG TGCAAGAGCT AGAGTACCGT TTTAAACACA AAAATGGTCG CTGGATCTGG
TGCCGGTCTT TCGATGCGGT TTTTTCACGT GACGAAGAGG GCAAACCCAT TGAAATGATC
GGCACGTTTA TTGATGTTAC ATCTATTAAG GAATATGCGC GTCGTTTGGA AAAGTCCAAT
GAAGAGTTAG AGCGATTTGT GTATGTTGCC TCGCACGATT TGCAAGAGCC ACTGCGTAAA
GTAATTGCTT TTTCTTCTCA TTTAGAGAGC AATATTAAGC GTGAGCAGTT AAGTGATGAG
GATTGGTTTG TACTAGGGCG TATTGTCGAT GGCGCATCTA GAATGCGCGA TCTGATCACC
GACATGCTAA GGCTATCGCA CGTTACCAAA GCAGAGCTCA AGCTGGAAGA GGTTGAGCTA
GAGAATATGG TCGAGAGTAC GCGAGATATG CTGGCTGCTG AAATATTAGA AACCCATGCA
AGTGTAGAAT TACGATATTC TCAAAAGGTT TATGTCGACA GGGCGCTATT TATCCAATTG
TTGCAAAATT TGGTGGGTAA TGCCCTAAAG TACCGTCGTC CAGAGGTTCG CCCGCGTGTG
GTTATAGAAG TTATCGACTA TATTGATGAG AGTGGCGAAG TTTTTGATCA GGTAGTAATT
AGTGATAACG GTTTAGGGTT TGACAATTCT CAAGCCAGTG ATATTTTTCG ACCGTTTAAG
CGCTTGGTTA CCCGTGCGAC ACACCCCGGG TCGGGTATTG GCTTGGCGAT ATGCGAGCAA
ATTGTCAAAG CACACAGGGG GAATATCACG GCGGAAGGGC GACCGAATGT TGGCGCAAGA
ATATACATAA ACCTTCCCAA AAAGAATATA ACGCTAGATA CGCAAGCAAG CGTCTAG
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| Protein sequence | MVGDRRRGLI DALLQFFSEE YMPHGHCYLW RPDILWTHVV SDSVIAIAYF SIPLGLVYLK
KKRSDIQFSW LLVLFSSFIL LCGLTHVYSI YNIWVGSYGG QGVLKAITAL ASIGTAFALI
HVLPKVATIP TTEELAEARE SASQETIRRI QLEAAHREEA HLREATNASP VGLLVSDERG
NITLANNALA ELFGYDASEL NGQSINMLID AETSQHHGKL VGQFLESEET SRVMASGRVV
SGVRKDGAKI PVDIRLAKRE SEGEVRIFAA VTDLSEKLAA QEEIREANMR FERITKATQE
GLWEWNIETN TMWWSTVAWQ LLGYNETSSH ASMDQWLTHL RSDFRHSINA ALQDHLQRGL
PFDEECVVTT LSGEERWIHI FGNSVYDKSG QPIVMSGAMQ DIQLRKDMEL VLREKSQFLE
SIFQGTSYSV FVLDADKQGT LRYSAFNNAV EQLTGIAAAE CLGKTPLDLA PDYVPEKTAQ
EIQSRYNLCY MSKRPSSYVE TIEFKGRVTW WKTALFPLLD NENRVYRIIG SSTDITDLKH
AEQKLTERES FLKNVVDLSI SGLYIFNLKT NVNTFINNQY TRITGYTLED LRSKSDLMQY
FHSEEQQLII DHIERVIVSR EGEVQELEYR FKHKNGRWIW CRSFDAVFSR DEEGKPIEMI
GTFIDVTSIK EYARRLEKSN EELERFVYVA SHDLQEPLRK VIAFSSHLES NIKREQLSDE
DWFVLGRIVD GASRMRDLIT DMLRLSHVTK AELKLEEVEL ENMVESTRDM LAAEILETHA
SVELRYSQKV YVDRALFIQL LQNLVGNALK YRRPEVRPRV VIEVIDYIDE SGEVFDQVVI
SDNGLGFDNS QASDIFRPFK RLVTRATHPG SGIGLAICEQ IVKAHRGNIT AEGRPNVGAR
IYINLPKKNI TLDTQASV
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