| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0649 |
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| Symbol | |
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| ID | 3964978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 818612 |
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| End bp | 821215 |
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| Gene Length | 2604 bp |
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| Protein Length | 867 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637919710 |
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| Product | cellulose 1,4-beta-cellobiosidase |
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| Protein accession | YP_526123 |
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| Protein GI | 90020296 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.387734 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTTA CTTCAATCAT GTTTGAACAA TCAGTAAAAA AAGTCGCTAA GTCAGCCATT
GCCGTGGCAG TTGCTTCGGC GGTTACCTTA AGTGCGGCGC AGGCCGAGGT GGGTAACCCA
CGTGTTAACC AAGTAGGCTA TATACCCAAT GGTGCCAAAG TTGCCAGTTA TGTTGCGCCA
TCAAATACGG CACAAACGTG GCAGTTACTG CGTAATGGCA GTGTGGTTGC AAGTGGCACT
ACAACCCCAA AGGGTACAGA TGCAGCCTCG GGTGACAATA TTCACCATAT CGATTTTTCT
GCGGTGAGTG CAACCGGCGA AGGTTTTAGT TTGCTTGTGG GCGGCGATGA AAGTTACCCC
TTTGAAATTT CTGCCGACGC ATTTACACCG GTTTTATACG ATTCCATCCG TTACTTTTAT
CACAACCGTT CGGGTATCGC GATTGAAACG CAGTACACCG GTGGCGGTAA CGGTAGCTAC
GCGGCGAATG CTCAGTGGGC TAGGCCCGCA GGTCACATTA ATCAAAATGC TAACCAAGGC
GATAATGCGG TGCCGTGTTG GTCGGGCAGT GGTTGCAACT ACGCCTTAGA CGTAACTAAA
GGTTGGTACG ATGCCGGTGA CCACGGTAAA TATGTTGTAA ACGGTGGCAT TTCCGTATGG
AAGCTATTAA ACATGTACGA GCGTGCCTTG CACATTAGTG GCAGCCAAAA TAAATACGCC
GACGGTACAT TAAATATTCC TGAAAGCGGC AATGGCGTGG CGGATATTTT GGATGAAGCT
CGCTGGCAAA TGGAGTTTTT ATTAGCCATG CAAGTGCCAG AGGGCGAAGC GAAAGCTGGC
ATGGTGCACC ACAAAATGCA CGATGTGGGT TGGACAGGCT TGCCACTAGC ACCCCATGAA
GATAATCGCG AGCGCGCGCT TGTGCCGCCT TCGGTTACTG CAACCCTTAA CGTTGCGGCC
ACAGGCGCGC AGTGTGCGCG TTTATTTGAC GAAATAGATG CGAGTTTTGC AGCAAGTTGT
TTAACTGCCG CAGAGCGCGC ATGGGATGCA GCCCTGCAAA ACCCTAACGA TGTTTACACT
GGCGGCTACG ATAATGGCGG CGGTGGTTAC GGCGATGAAG TGGCGGACGA CGAGTTTTTC
TGGGCTGCTG CTGAGTTATA CATTACCACT GGCGATAGCA AATATCTTTC AACCATTAAC
AACTACAATG TAACGCGCAT TGATTGGGGC TGGCCAGATA CCGAGTTGCC TGCGTTGATG
TCGTTAGCGG TTGTGCCTGC TAATCACACC GCAAATTTGC GTGCGACTGC TCGTGCAAAA
ATTGTAGAAA TTGCAGATAC CCATGTCGCT ACCAGTAATG CTGCCGGCTA TTTAACACCA
TCGTCCGCGC TGGATTACTA CTGGGGTTCT AACAATGGCG TAGCCAATAA AATTGCGTTA
CTTGGTTTGG CATACGATTT TACTGGCGAT GACGTTTACG CGAAAACGGT GTCGAAAGCA
GTTAACTATT TATTTGGTAA TAATACCTTA TCGTTTTCTT ATATTTCTGG GCATGGCGAA
AATGCTTTGC AACAGCCGCA TCACCGCTTT TGGGCTGGGG CATTAAATGG AAGTTACCCA
TGGTTGCCGC CTGGTGCGCT TTCTGGTGGC CCTAACGCAG GGTTAGAAGA TGGCGTTGCC
GCCGCCGCGC TAAGTGCTTG TGTTTCAACG CCTGCCAAAT GCTATATGGA TGATATTGAA
TCTTGGTCGA CCAACGAAAT TACTATTAAC TGGAATGGTG CATTGGTTTG GGCAATGGCG
TTTTATGATG ACTACGCCGA TTCGGGTAGC GGTTCTAGCT CGTCAAGTTC TTCTAGCTCA
TCTAGCTCTT CGTCAAGTTC TTCCAGTTCG ACTTCTAGCT CGTCGTCTTC TAGTAGTAGC
TCTTCGTCGA GCGGCTCGAG TTCTTCTAGC AGCTCTTCCA CATCCAGTTC CAGCTCTTCG
AGTTCATCGG GTGGGGAGTG TGTAGAAATG TGTAAGTGGT ATCAAGATGC ACCGCGCCCT
CTATGCAATA ACCAAAACAG CGGTTGGGGA TGGGAGAACC AGCAGAGTTG TATTGGTAGA
ACAACTTGCG AAAGTCAAAG TGGCAATGGT GGAGTGATTA ATTCGTGCGG CACGTCTAGC
TCGAGCTCTT CATCTAGCTC TAGCAGTAGC TCTTCGAGTT CATCCAGCTC TTCTAGCAGT
TCTTCCACAT CAAGCTCGTC GAGTAGTTCG TCTTCTAGCT CTTCTAGTTC GACTTCAAGT
TCTTCGTCGA GCAGTTCAGG GGGCGTTGCA GGTGTGGCTT GTGCGGTAAC CAAAATGAAC
CATTGGGGCA GCGGATATCA ATTAGATGTA ACAGTTTCTA ATAATGGTGC TGCAGCGGTA
AGTGGTTGGA GTATTGAACT CGATTTTGGT GAATCGCCAC AGCTTACTGG TAGTTGGAAT
GCTGCTGTAT CGGCATCTGG TAATACTGTA TCGGCTACTA ACATTAGTTG GAACGGTAAT
TTAAGCGCTG GGCAATCTAC CTCTTTTGGT ATGCAGGGTA ATTCAGATGG TTCGCTGAGC
ACGCCAAGCT GTTTAGTTAA GTAA
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| Protein sequence | MNLTSIMFEQ SVKKVAKSAI AVAVASAVTL SAAQAEVGNP RVNQVGYIPN GAKVASYVAP
SNTAQTWQLL RNGSVVASGT TTPKGTDAAS GDNIHHIDFS AVSATGEGFS LLVGGDESYP
FEISADAFTP VLYDSIRYFY HNRSGIAIET QYTGGGNGSY AANAQWARPA GHINQNANQG
DNAVPCWSGS GCNYALDVTK GWYDAGDHGK YVVNGGISVW KLLNMYERAL HISGSQNKYA
DGTLNIPESG NGVADILDEA RWQMEFLLAM QVPEGEAKAG MVHHKMHDVG WTGLPLAPHE
DNRERALVPP SVTATLNVAA TGAQCARLFD EIDASFAASC LTAAERAWDA ALQNPNDVYT
GGYDNGGGGY GDEVADDEFF WAAAELYITT GDSKYLSTIN NYNVTRIDWG WPDTELPALM
SLAVVPANHT ANLRATARAK IVEIADTHVA TSNAAGYLTP SSALDYYWGS NNGVANKIAL
LGLAYDFTGD DVYAKTVSKA VNYLFGNNTL SFSYISGHGE NALQQPHHRF WAGALNGSYP
WLPPGALSGG PNAGLEDGVA AAALSACVST PAKCYMDDIE SWSTNEITIN WNGALVWAMA
FYDDYADSGS GSSSSSSSSS SSSSSSSSSS TSSSSSSSSS SSSSGSSSSS SSSTSSSSSS
SSSGGECVEM CKWYQDAPRP LCNNQNSGWG WENQQSCIGR TTCESQSGNG GVINSCGTSS
SSSSSSSSSS SSSSSSSSSS SSTSSSSSSS SSSSSSSTSS SSSSSSGGVA GVACAVTKMN
HWGSGYQLDV TVSNNGAAAV SGWSIELDFG ESPQLTGSWN AAVSASGNTV SATNISWNGN
LSAGQSTSFG MQGNSDGSLS TPSCLVK
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