| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0603 |
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| Symbol | |
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| ID | 3965010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 760473 |
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| End bp | 762896 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637919666 |
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| Product | bifunctional penicillin-binding protein 1C |
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| Protein accession | YP_526079 |
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| Protein GI | 90020252 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAACG GAGTTAAACA GATATTTGCG CGGCGGTGGC ATGTGTTTTA CGGCCTCCTT
ATTCGCGCAT GCCGAATTAA ACCTGTTCGG TTAAGCTTGG TGTGGTTAAG TATTTATTGT
GTAGGCCAGC TTAGCTTAAT CGTTTTGTGT ACGCTGTTGC CTTTACCGGA ACGCAACGAT
AAACACGATT TTGCCAAGGT AGTGGTAGAT AGTCGCGGCG AACCGCTGCG AGTCTTTGCC
GATTCAAACG GCGTGTGGCG TTATCAAGTA GCGCTTGATG ATGTTTCGCC TTTATATATA
GAGGCGCTGC TTACCTACGA AGACCGTTGG TTTTACTGGC ACCGCGGCGT TAACCCTTTT
GCATTGTTAC GCGGTGCAGG CCAGTGGTTA ATAAATGGCA GGCTTATTAG TGGTGGTTCT
ACACTTTCGA TGCAAGTTGC GCGCATACTA GAGCCACACC CGCGCACATT CGTTGGCAAA
GCGCGGCAAA TGTTTCGCGC TATTCAATTA GAGCGCACTT ATAGCAAACA GCAAATTCTT
ACCCTCTATT TAAACTATGC GCCATTTGGC GGGCCAGTAG AAGGTGTGCA GGCGGCAAGC
TATATTTATT TTGGCAAGCC AGCAAAACAA CTTACCCATG CCGAGGCGGC GCTGCTGGCG
GTGCTGCCGC AGGCTCCTTC GCGCCTGCGG CCAGATCGCT ATGCGCAGCG TGCCGAACAA
GCGCGCAATA AAGTGTTGGC AAGAATGCAG CACTTTAATG TGTGGTCGCA GCAACAGGTA
AACGAAGCCA AACAAGAACC TGTTATTGCC CGCCATATAA GCGCCCCAAA AACAGCACCG
CTGTTAGCCC GCAGGTTAAT TCAGCAGTAT CCGCAGCAGC AGGTTATTCA TTCAACGCTT
GATAAAAATT TACAGCAAGC GCTAGAAACA ATTGCGCAGG ATTACGCGCT AACCTTACCG
CAAAAAACAT CTACCGCAAT TTTGGTCTTA GATAATTACA CTATGGCGGT GCGCGCTTAT
GTGGGCAGTG CTAATTTCGA CGATTTAACA CGCTATGGCC ACGTGGATAT GATTACCGCC
AACCGCTCGC CTGGGTCCAC GCTCAAACCA TTTTTATACG GCATGGCAAT AGACGAAGGA
TTAATTCACG AGCAATCGCT ATTGCTAGAT ACGCCCACCG ATTTTGCTGG TTATCGCCCA
GAAAATTTTG CGCAGGATTT TTCCGGCCCA GTGTCTACGC GCCAAGCATT GCAGCGCAGT
TTAAATGTGC CCGCCGTGCA AGTATTAGAT GCCCTAGGGC CACAGGCCTT TTATGCGCGA
CTAGCCTCTG CCGGTTTAAC ATTAAAACTA CCTGCAGAAG CCGCACCCAA TCTATCGCTT
ATTCTCGGCG GCGCAGCGGC GAGTTTAGAA GATTTAACCG CAACCTTTGC CGCCATCGGT
CGAGGTGGCG TAACCCGTGC GCCGGTGTAT ATACAAAACC AAACACCAGC ACCAGAACGC
ACGCTGTTAT CTGCCGCGAG TGCTTGGGTT GTGGGCGATA TATTGCGCGG TGTTGCGTTA
AATTCTGCCC ACAGGCAAAC CGTTATTGCC GCTAATACAC CGCGCATAGC TTTTAAAACC
GGCACCAGCT ACGGCTACCG CGACTCTTGG GTATTAGCCG CGAGCGAACA CTACACCATT
GGCGTATGGG TAGGGCGCCC AGACGGCACA CCCACTGCGC AAAATGTGGG TAGAGAAAAC
GCCGTGCCGC TTTTGCGCAA AACACTGGCA TTATTTAGCG ATGCCCAATT GGCACCACCG
AAGCGCCCAG CGGGGTTAAG CCGCGAGTTA ATATGCTGGC CATTGGGTGG ATTAAAACAA
CTGCAGAGCG CGGCAGAGTG TTTGCGCGAA AAGTCTGCGT GGTTGTTGGA TGGTGCAGCA
GCGCCCACCT TGCGCGAACC GCTAATGGCG CAATGGTCGA GTTACAAACT AACGCTTGCG
GTCAACGCCA AGGGGGAACA GGTGTTGCCA CAATGCATGG CTAGCGCGCA GGCAGGGGCC
ACTCAAAACA TAACCCTTGC GGTGTGGCCA CGAGTACTCG AACCTTGGCT ACCGCAAAAG
TGGCGGCGCG CGCATTTATT ACCTGCGCTG GCGGCAAACT GTAAACACGC CGTGCGCGAT
ACCGGTCAGC AACTAGTGTT AGAAGGCATT AGTAATAACG CCGAGTACTA CCCCGCGCCA
GGCCAGTCGA ACATTACTTT GCAGCCCAGC GTGCGTGGCG CTAGCGGTAA GGTGGAGTGG
TTTGTTAACG GCGTATGGGT TGCGGCTACA GTAGGTAGCA GCCATTCGCT TGAGCTGGCT
AAATTGGCAG TGGGTAAACA CACGCTAAGT GTTATGGATG CCGCCGGGCG ATTTGATGAA
ATTGTTTTTT ATGTTGGGGG TTAA
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| Protein sequence | MGNGVKQIFA RRWHVFYGLL IRACRIKPVR LSLVWLSIYC VGQLSLIVLC TLLPLPERND
KHDFAKVVVD SRGEPLRVFA DSNGVWRYQV ALDDVSPLYI EALLTYEDRW FYWHRGVNPF
ALLRGAGQWL INGRLISGGS TLSMQVARIL EPHPRTFVGK ARQMFRAIQL ERTYSKQQIL
TLYLNYAPFG GPVEGVQAAS YIYFGKPAKQ LTHAEAALLA VLPQAPSRLR PDRYAQRAEQ
ARNKVLARMQ HFNVWSQQQV NEAKQEPVIA RHISAPKTAP LLARRLIQQY PQQQVIHSTL
DKNLQQALET IAQDYALTLP QKTSTAILVL DNYTMAVRAY VGSANFDDLT RYGHVDMITA
NRSPGSTLKP FLYGMAIDEG LIHEQSLLLD TPTDFAGYRP ENFAQDFSGP VSTRQALQRS
LNVPAVQVLD ALGPQAFYAR LASAGLTLKL PAEAAPNLSL ILGGAAASLE DLTATFAAIG
RGGVTRAPVY IQNQTPAPER TLLSAASAWV VGDILRGVAL NSAHRQTVIA ANTPRIAFKT
GTSYGYRDSW VLAASEHYTI GVWVGRPDGT PTAQNVGREN AVPLLRKTLA LFSDAQLAPP
KRPAGLSREL ICWPLGGLKQ LQSAAECLRE KSAWLLDGAA APTLREPLMA QWSSYKLTLA
VNAKGEQVLP QCMASAQAGA TQNITLAVWP RVLEPWLPQK WRRAHLLPAL AANCKHAVRD
TGQQLVLEGI SNNAEYYPAP GQSNITLQPS VRGASGKVEW FVNGVWVAAT VGSSHSLELA
KLAVGKHTLS VMDAAGRFDE IVFYVGG
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