Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0548 |
Symbol | |
ID | 3967891 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 669844 |
End bp | 670827 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637919611 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_526024 |
Protein GI | 90020197 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3713] Outer membrane protein V |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0000364413 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACTGC GTGCACTTAA AACAGCTGTT GCTGGCGTGC TGTGCTGGTT AATACTTGCC CAGCAGGCAA ACGCTTGTAC GCAAGATGAG ACCGAATGCG TGGAGGTGGG GCGCTGGGAC TTATCCGTTG CCATTGGCGC AGGCGTTCGC ACCAACCCAA TCGCCGGTGG CGATAACCTC CCCATAGTGA TTATTCCCAA CCTTACCTAT TACGGTAAGC GTTTTTATTT AGAAAACTAT ACGTTGGGCT ATTCGCTAGT AGAGCAGCCC ATTTACAGCG TGAACCTTGT ACTTACCCCC AGCTACGATC AAATTTATTT TCAAAAGTGG GGGCTGGGGA ATATTTCGTT TGATTCTGGC GCCGGTGACA GCACTGCGTT TGCTTCGGAA GGCATAATTA ATAACACGCC AGCAGAAGGC ATGGATGTAT TGGCTTCCGA TGTTGTGGAG GCCGATGATG TGCAGCGCCC GCCGGTAGCC GGGCCCCCAA CCCCTGCAGA ACCTAAAGTA GTAGAGCCGG TTTATACCCT AGATTTAGCC GAGTTAGATA AGCGTAAACA AACAGGTTTG GGCGGCGCCG AGTTTACTTA TTTTGGCGAA AAGTGGGTGG CGTCGCTTAA CGTATTGCAA GAAGTGCTAA ATGTGCACGG CGGCCAAGAA GTTCGCCTAG CCGCGTCGCA AAATTTTGCA GCAGGAAAGT CGCGCTATCA GTTTGCTACA GGGCTTACCT GGCAAAGCGT AGATTTGCTC GATTATTATT TTGGCGCGCA TGAAGGCGAA GTGGATGAAT CCATGGAGTA CGAAATTCGC GAAAGTGGTA TTACGCCCTT TGTGCGGCTA AGTTGGTCTC GAGAGTTAAA TGAGCACTGG CGGCTACTGG CCTCGGTGCA TCACAAGCGT TTGGCCGATG CCATAGTCGA TAGCCCGCTA GTGGAAGAAA GTAGTGTGAC TACCGTATTT ATTGGCGGGG TATATCACTT TTAG
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Protein sequence | MPLRALKTAV AGVLCWLILA QQANACTQDE TECVEVGRWD LSVAIGAGVR TNPIAGGDNL PIVIIPNLTY YGKRFYLENY TLGYSLVEQP IYSVNLVLTP SYDQIYFQKW GLGNISFDSG AGDSTAFASE GIINNTPAEG MDVLASDVVE ADDVQRPPVA GPPTPAEPKV VEPVYTLDLA ELDKRKQTGL GGAEFTYFGE KWVASLNVLQ EVLNVHGGQE VRLAASQNFA AGKSRYQFAT GLTWQSVDLL DYYFGAHEGE VDESMEYEIR ESGITPFVRL SWSRELNEHW RLLASVHHKR LADAIVDSPL VEESSVTTVF IGGVYHF
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