Gene Sde_0548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0548 
Symbol 
ID3967891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp669844 
End bp670827 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content51% 
IMG OID637919611 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_526024 
Protein GI90020197 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3713] Outer membrane protein V 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0000364413 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACTGC GTGCACTTAA AACAGCTGTT GCTGGCGTGC TGTGCTGGTT AATACTTGCC 
CAGCAGGCAA ACGCTTGTAC GCAAGATGAG ACCGAATGCG TGGAGGTGGG GCGCTGGGAC
TTATCCGTTG CCATTGGCGC AGGCGTTCGC ACCAACCCAA TCGCCGGTGG CGATAACCTC
CCCATAGTGA TTATTCCCAA CCTTACCTAT TACGGTAAGC GTTTTTATTT AGAAAACTAT
ACGTTGGGCT ATTCGCTAGT AGAGCAGCCC ATTTACAGCG TGAACCTTGT ACTTACCCCC
AGCTACGATC AAATTTATTT TCAAAAGTGG GGGCTGGGGA ATATTTCGTT TGATTCTGGC
GCCGGTGACA GCACTGCGTT TGCTTCGGAA GGCATAATTA ATAACACGCC AGCAGAAGGC
ATGGATGTAT TGGCTTCCGA TGTTGTGGAG GCCGATGATG TGCAGCGCCC GCCGGTAGCC
GGGCCCCCAA CCCCTGCAGA ACCTAAAGTA GTAGAGCCGG TTTATACCCT AGATTTAGCC
GAGTTAGATA AGCGTAAACA AACAGGTTTG GGCGGCGCCG AGTTTACTTA TTTTGGCGAA
AAGTGGGTGG CGTCGCTTAA CGTATTGCAA GAAGTGCTAA ATGTGCACGG CGGCCAAGAA
GTTCGCCTAG CCGCGTCGCA AAATTTTGCA GCAGGAAAGT CGCGCTATCA GTTTGCTACA
GGGCTTACCT GGCAAAGCGT AGATTTGCTC GATTATTATT TTGGCGCGCA TGAAGGCGAA
GTGGATGAAT CCATGGAGTA CGAAATTCGC GAAAGTGGTA TTACGCCCTT TGTGCGGCTA
AGTTGGTCTC GAGAGTTAAA TGAGCACTGG CGGCTACTGG CCTCGGTGCA TCACAAGCGT
TTGGCCGATG CCATAGTCGA TAGCCCGCTA GTGGAAGAAA GTAGTGTGAC TACCGTATTT
ATTGGCGGGG TATATCACTT TTAG
 
Protein sequence
MPLRALKTAV AGVLCWLILA QQANACTQDE TECVEVGRWD LSVAIGAGVR TNPIAGGDNL 
PIVIIPNLTY YGKRFYLENY TLGYSLVEQP IYSVNLVLTP SYDQIYFQKW GLGNISFDSG
AGDSTAFASE GIINNTPAEG MDVLASDVVE ADDVQRPPVA GPPTPAEPKV VEPVYTLDLA
ELDKRKQTGL GGAEFTYFGE KWVASLNVLQ EVLNVHGGQE VRLAASQNFA AGKSRYQFAT
GLTWQSVDLL DYYFGAHEGE VDESMEYEIR ESGITPFVRL SWSRELNEHW RLLASVHHKR
LADAIVDSPL VEESSVTTVF IGGVYHF