Gene Sde_0400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0400 
Symbol 
ID3967608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp496347 
End bp497126 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content47% 
IMG OID637919463 
Productbax protein, putative 
Protein accessionYP_525876 
Protein GI90020049 
COG category[R] General function prediction only 
COG ID[COG2992] Uncharacterized FlgJ-related protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.342974 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAACG CTAAAACTAA GTTTATTGCA CTGCTTTTTA CCGCCTATAT TATTGCCACC 
TTTGGCCTAC TTATTTGGGC AATTCAGCAC TCCCCCAGCC GCGCCATTAA TACTTCTACT
GCGTTTGGCC CAGCCCCAGA CTTTAGCGCC ATTACCGATA TTGCCGAACG CAAAGCGACG
TTTTTTAATT ATTTCACCCC CATTATTGAA CACAAAAACA CGTTAATACT TGCCGACAGA
GAACGACTGG CGGCGGTGCA AAACGACTGG CAAGAAGATG CAACACTCAG CAACACTCAC
CAGTTTTATC TTTCGCGCTG GCTTAAGCGC TATAAAATTA AAGAAGAGTG GCCAATCGAA
AAACAATTGG CAGAGCTAAA CAAGCGCATG CACATCATTC CGCCCGCACT GGTATTGGCG
CAAGCAGCTA ACGAATCGGC TTGGGGTACA TCGCGCTTTG CGCAAGATGG CAATAATTAT
TTTGGTCAGT GGTGTTTTAA AAAGGGCTGC GGCTTGGTGC CAAGTGGACG ACGCGCTAAC
GCTAAACATG AAGTGCGAAA ATTTAAAAGC CCAGCGGGTT CGGTGGACGC CTACCTGCGC
AACTTAAATA CTCACCGTGC TTACAAGCAA TTGAGAAACA TTCGCGCCCA GCTGCATCAA
GCGAATCAGC CAATTACCGG CGTAGCATTG GCGGAAGGTT TAATAAAATA CTCGGAGCGC
GGTGAAGAAT ACGTGCATGA GTTACAAGCG ATGATGCGCA GTAACGGCTT AGAGGAGTAA
 
Protein sequence
MQNAKTKFIA LLFTAYIIAT FGLLIWAIQH SPSRAINTST AFGPAPDFSA ITDIAERKAT 
FFNYFTPIIE HKNTLILADR ERLAAVQNDW QEDATLSNTH QFYLSRWLKR YKIKEEWPIE
KQLAELNKRM HIIPPALVLA QAANESAWGT SRFAQDGNNY FGQWCFKKGC GLVPSGRRAN
AKHEVRKFKS PAGSVDAYLR NLNTHRAYKQ LRNIRAQLHQ ANQPITGVAL AEGLIKYSER
GEEYVHELQA MMRSNGLEE