| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0387 |
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| Symbol | |
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| ID | 3967595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 477227 |
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| End bp | 478987 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919450 |
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| Product | lipid A ABC transporter, ATP-binding/permease protein |
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| Protein accession | YP_525863 |
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| Protein GI | 90020036 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAC CGGCTAAACC CACCTCTGTA GAATCCTATA AACGCTTGCT TAGCTATGCG
TTTAAATACA AAGCCTATTT TATTATTAGC TTTATTGGTT TTGGCGTTTT CGCAGCCATG
GAAGCCCAGC TAATTAATAT TTTAGAATAT TTTGTAGATA GACTAGAGGG GCGCCCTTCG
GCACCGGTAT TGGGGTTATC TGCCGATGTC ACTTCATCTT TGTGGTTTGT GCCTATCTCG
GTTGTGGTGC TCAGTATTAT TCGCGGCATT GGCGCCTACT TCGGTAATTT TTATATGAGC
CTTGTAGGCT TAAACGTCAT TACCAACCTG CGCCGCCAAA TTTTTTCGCA AATGATTTAT
TTGCCACAAT CTTTTTACGA TACAAAAAAT AGCGGCGAGC TTATATCGCT ATTGGTGTAC
AACATAGAGC AAGTAACGGG GTCGGTAACC AACGCGGTAA AAACCCTGTT TAGAGACGGC
ATGAGCGTAG CTTGGTTTTT AGCAATGATG CTAATTATCA ACTGGAAACT CACCCTCGCG
TTTATTTGCG TAGCCCCTGT GTTGGGCGGC CTTATGTATA TTGCCAGCAA ATACTTCCGC
AAAGTTAGCC ACAAAATTCA GTCTGCCGTT GGCCGCGTAA GCCATGTCGC CACCGAAAGT
ATTCAAGGCA TTAAACTGGT AAAAAGTTAC GGCGGCGAAA AATACGAACT AGACCGCTTT
AACGATGCCA CCAACCAAAA CCTGCACTAC GGCACCAAGT TCGAACGCGT GTCTGCTTTT
CAAACCCCCG TATTACACAT AGTGCTGGCG CTGGCGCTAG CGGTAACCTT TTATTTAATT
ATGATTTTAT GGGATAGCGA CTCATCCAAA GCCGTGGTGT ACGCCACCTA CGCAGCCGCT
ATAGCCAAAC CCTTTAGGCA ACTAACCAAA ATAAACAGCA TTATCCAAAA AGGCCTTGCC
GCTGCCGACA CCATTTTTGA AGTGCTCGAC CTACAAGCCG AACCCAATAG CGGCCAGCAA
AAACTTAACG CACCGAAAGG CCGAGTAGAA TTAAAAGACG TTCACTTTGG TTACAATCAA
GATACCCCAG CCCTAAACGG CATAAGCTTT GCCATAGAAC CTGGCCAAAC CGTGGCGCTG
GTGGGTAGCT CGGGCAGTGG TAAATCTACC ATTGTGAGCT TACTGTTACG CTTTTACGAT
AACCAACAGG GCAGCATTAC TATTGATGGC ACACCAATTC AATCGCTTGA ATTGCACAAC
CTGCGCGAAC ACATTGCACT GGTTAACCAG CAGACCATTT TATTTAACGA TACCATTGCC
GCGAACATTG CCTACGGCAG CGAACATATA GACGAAGCGC GCATTCAAGA TGCCGCCAAG
CAAGCCAACG CGCACGATTT TATTATGGCA CTGCCTAACG GCTACCAAAC ACCCGCCGGT
GAAGATGGCT CACGCCTTTC TGGTGGTCAG CGCCAACGTA TAGCTATTGC CCGCGCGCTA
TACAAAAACG CCCCTATATT AATTTTAGAT GAAGCCACAT CGGCGTTAGA TAACGAATCG
GAAAAACAAA TTCAATCGGC ATTGGATGAA TTAAAACAAG GGCGTACCAC ACTGGTTATC
GCCCACCGTT TATCCACCAT AGAAAACGCC GACACCATTT TAGTAATGGA TAACGGCCGC
ATTGTTGAGG CTGGCAACCA TCAAACACTA CTCGATCGCA GCGGTGTATA CGCCAACCTC
TACCACTCCC AGTTTTCGTA A
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| Protein sequence | MSTPAKPTSV ESYKRLLSYA FKYKAYFIIS FIGFGVFAAM EAQLINILEY FVDRLEGRPS
APVLGLSADV TSSLWFVPIS VVVLSIIRGI GAYFGNFYMS LVGLNVITNL RRQIFSQMIY
LPQSFYDTKN SGELISLLVY NIEQVTGSVT NAVKTLFRDG MSVAWFLAMM LIINWKLTLA
FICVAPVLGG LMYIASKYFR KVSHKIQSAV GRVSHVATES IQGIKLVKSY GGEKYELDRF
NDATNQNLHY GTKFERVSAF QTPVLHIVLA LALAVTFYLI MILWDSDSSK AVVYATYAAA
IAKPFRQLTK INSIIQKGLA AADTIFEVLD LQAEPNSGQQ KLNAPKGRVE LKDVHFGYNQ
DTPALNGISF AIEPGQTVAL VGSSGSGKST IVSLLLRFYD NQQGSITIDG TPIQSLELHN
LREHIALVNQ QTILFNDTIA ANIAYGSEHI DEARIQDAAK QANAHDFIMA LPNGYQTPAG
EDGSRLSGGQ RQRIAIARAL YKNAPILILD EATSALDNES EKQIQSALDE LKQGRTTLVI
AHRLSTIENA DTILVMDNGR IVEAGNHQTL LDRSGVYANL YHSQFS
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