| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0366 |
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| Symbol | |
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| ID | 3967613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 452979 |
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| End bp | 454343 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637919429 |
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| Product | putative secretion protein |
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| Protein accession | YP_525842 |
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| Protein GI | 90020015 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.676066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGT CTTTACAAAA AATTATCGCG CTCGCGGCCT TTGGATTTGC CGCCGCAGCT
CAACACAGCC AAGCGGAAAC GCTGGCCGAG ATATACCAGC AAGCGCTCGA GAACGATCAC
TCATTCTTGG CTGCCAAAGC GGCGTTAGAA GCGGGCCAAG AAAACAAAAA CATTGGTCGC
GCAGGTTTGT TGCCACAAAT AAGTGCCGAA GCGAGCTGGG CAGATAGCGA AAATACAACA
ACTGAATACG ATATAAATGC TACCCCAACA GAAACCAGCA CCACACAAAA CAGCACCACT
ACCGGCTATA GCGTTTCCCT TAGCCAAACC TTATTCAACC TTGCAAGCTG GCATACCTAT
AAGCAAGGTA AAGCTAGGGC GCAAATTGCT GAGGTTAACT ATGCTGCCGC CGAGCAAGAG
GTAATAGTGC GGGTTGCTCA AGCTTATTTT GATGCATTGG CTGCGGTAGA TAATTTCGAT
ACGGCTAAAT CTGAAGAAGA AGCGCTTAAA CATCAGTTAG AGCAAACCAA ACAACGCTTT
GAAGTGGGCC TAACCGCCAT TACCGAAGTG CACGAAGCGC AAGCCGCTTT CGACTCTTCA
ACCGCAACCC GCCTAGCTGC TGAAGGCCGC TTAGGTATTG CATTCGAAGC CTTAGAAGTT
ATTACGGGTC GCCCTTACCG GTCGCTCAAC CCAATGCGTG CAGACTTCCC TGTAACGGCA
CCAGAACCTG CCGATCGCAA CCAATGGGTA GAGTTTGCAT TGGCAAATAA CTTTGATTTA
AAAGCAGCGT CACTTAATGC CGAAGCCGCA CAGCAAAATG CCAAGGCGCG CAGAGCGGAT
CACGCACCAA CGCTAACTGC AGGCGTAAGC TATTCGGATA AAACCACCGA AATAGGTAGT
GGGTTCGAAA CAAACCCAGA AAACCAAACC CTTAGCCTTA CTTTAAAAGT GCCAATTTAT
GCCGGTGGCG CCACTCATGC TTCACGTCGC CAAGCCAATG CTCAAGCGTG GGAATCGCGC
GAGCTTTTCA ACAAAGCGCA GCGAGATATT ATTCAGCAAG CACGCTCTAA CCACTTGGAA
GTAATGACCG GCGTGGCCAC TGTAAAAGCG CGCAAGCAGG CTATTACCTC TAGCGAGAGC
GCCCTGCGCG CAACGCAAGC TGGCTATGAG GTAGGCACAC GCGATTTAGT CGACGTACTA
AACGCACAAC GCAGCCTATT CCGCGCCCGC CGCGACTACT CCGACGCACT CTACGCTTAC
GTAGTTAACA CCCTCAAACT AAAACAAGTA GCGGGCACAC TTTCTACTGC AGATATAGAC
GCATTGAGTG GCTGGTTGGA TACGGCAAAA GAAGTGCAAT ATTAA
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| Protein sequence | MNKSLQKIIA LAAFGFAAAA QHSQAETLAE IYQQALENDH SFLAAKAALE AGQENKNIGR
AGLLPQISAE ASWADSENTT TEYDINATPT ETSTTQNSTT TGYSVSLSQT LFNLASWHTY
KQGKARAQIA EVNYAAAEQE VIVRVAQAYF DALAAVDNFD TAKSEEEALK HQLEQTKQRF
EVGLTAITEV HEAQAAFDSS TATRLAAEGR LGIAFEALEV ITGRPYRSLN PMRADFPVTA
PEPADRNQWV EFALANNFDL KAASLNAEAA QQNAKARRAD HAPTLTAGVS YSDKTTEIGS
GFETNPENQT LSLTLKVPIY AGGATHASRR QANAQAWESR ELFNKAQRDI IQQARSNHLE
VMTGVATVKA RKQAITSSES ALRATQAGYE VGTRDLVDVL NAQRSLFRAR RDYSDALYAY
VVNTLKLKQV AGTLSTADID ALSGWLDTAK EVQY
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