Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0288 |
Symbol | |
ID | 3965427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 359696 |
End bp | 360553 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637919350 |
Product | hypothetical protein |
Protein accession | YP_525764 |
Protein GI | 90019937 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3713] Outer membrane protein V |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.028889 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000185576 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTAAAA ATTGTATGCA ATTACGTTCA ATAAAAATTA TTTATAAGCT TATCGTTACC GTTATAGCTG TATGTGCCTC CGCGTATTGT GTTGCTGCAG ATATTAGCCG TTCGGTACAC CAGCACTCTG GCAATAACAG TGAGAACGGT GGTTATTTCG AATTGGGCAT GGCGTTAGAC TACCGAGAAG GCATTGAACT CATTAATGAA GAAGATGAAG AGCTAAGTTT AAGCCTGCGC TTAAATGCAG GTTACCAATG GAATAATTTA TTTATTGATC TTTACCCCAG TAGCCTTACG CCGTTTGTAA TAGGTTACAA CCTATACGAT GGCAAAGCGC TTTCGTTGGA TATAGTAACC GGCCCGCAAA ACGGCGGCTT TACTCAAGAA GATATAGGTG ACGCGGCCCC TATTAAAGAG CGTAATTTTG ATTATTTAGC CGGGCTAAGG CTAACCCATT TCTACGGCAA AAATATTCTA CAAGTAGAAG CGCGTAGCGA CGTAAGCAAT ACCCACAATG GCAATTTCTT TTTGGCGGTT GCAGGGCGCA GTTGGGCATT TGCTAATGGT ACTCAATACG CTCTGGGCGG CGTAATGTAC CAATCTAAAA ATACAATGGA TTATTATTTT GGCGTGCGAC CAGAAGAAAC TAGCGAGCAG GTAAATATAT ACCAAGCGGA TGCCGGTTTT ATTTATAAAT TAGAGTACGG CATTACTTAC CCGCTTTCGC CCAAATGGAT ATTGCGCACC AGCAGTACAC TCTACCATTT CGACGATACT GTAAAAAATA GCCCACTTAC CGTAGCGGGC AAAAGCGTAC TTGTCGAAGC CGATGTGTCT ATTAACTATG TTTTCTAA
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Protein sequence | MIKNCMQLRS IKIIYKLIVT VIAVCASAYC VAADISRSVH QHSGNNSENG GYFELGMALD YREGIELINE EDEELSLSLR LNAGYQWNNL FIDLYPSSLT PFVIGYNLYD GKALSLDIVT GPQNGGFTQE DIGDAAPIKE RNFDYLAGLR LTHFYGKNIL QVEARSDVSN THNGNFFLAV AGRSWAFANG TQYALGGVMY QSKNTMDYYF GVRPEETSEQ VNIYQADAGF IYKLEYGITY PLSPKWILRT SSTLYHFDDT VKNSPLTVAG KSVLVEADVS INYVF
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