| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0237 |
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| Symbol | dapF |
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| ID | 3968079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 296305 |
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| End bp | 297138 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637919297 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_525713 |
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| Protein GI | 90019886 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.142779 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTTC GCTTTACCAA AATGCACGGC CTAGGCAACG ACTTTGTAAT GATCGATGCC
ATAAGCCAGC GCGTCACCAT TACCCCAGAG CGAGCGCGCC AACTGGCCGA CCGCCATTTT
GGTGTGGGCT GCGATCAAGT ATTGGTTGTA GAAACACCCG ATTCCCCCGA CGCCGATTTT
AAATACCGCA TTTTTAATCA CGATGGCAGT GAAGTAGAAA ACTGTGGCAA CGGCGCCCGC
TGCTTTGCGG TGTTTGTGCG GCAGCGCGGA CTAACGGCAA AAAGCGTTAT TACCGTAGAA
ACAGCCGTGG GCCGCATGGT GTTACATGTA CAAGAAGACG ATCAAGTTAC TGTCGATATG
GGCGCACCTA TTCTTAGCCC CGCCGATATT CCCCTCGCAG CGCCGCAGCA GGCAACCAGT
TATACACTGC CAACGCAAGG CGCAGGCGAT ATAACAATTG GTGCCGTTTC TATGGGCAAC
CCCCATGCGG TGTACTGTGT TAACGACTGC AAAACCGCGC CGGTAGAAAC CCTCGGCCCA
GAAATAGAAG CCCACCCTCA CTTCCCTAAA AAAGTGAATG CCGGCTTTAT GCAGGTAGTT
AGCCCCAGCG AAATTAACCT GCGCGTATAC GAGCGCGGCG CAGGCGAAAC CTTAGCTTGC
GGGACCGGTG CGTGTGCCGC TGTGGTTGCT GGGCGTTTGC AGGGCTTGCT TGAAAACACC
GTAAAAGTAA ACCTGCCTGG CGGCAGCCTT TCTATAACGT GGGAAGGTGT AGACAGCCCA
GTAATGATGA CCGGGCCTGC CACCACGGTA TTTCATGGAC AAGTTAAGAT ATGA
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| Protein sequence | MRLRFTKMHG LGNDFVMIDA ISQRVTITPE RARQLADRHF GVGCDQVLVV ETPDSPDADF
KYRIFNHDGS EVENCGNGAR CFAVFVRQRG LTAKSVITVE TAVGRMVLHV QEDDQVTVDM
GAPILSPADI PLAAPQQATS YTLPTQGAGD ITIGAVSMGN PHAVYCVNDC KTAPVETLGP
EIEAHPHFPK KVNAGFMQVV SPSEINLRVY ERGAGETLAC GTGACAAVVA GRLQGLLENT
VKVNLPGGSL SITWEGVDSP VMMTGPATTV FHGQVKI
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