| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0233 |
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| Symbol | |
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| ID | 3968075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 293080 |
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| End bp | 294315 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919293 |
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| Product | ammonium transporter |
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| Protein accession | YP_525709 |
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| Protein GI | 90019882 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0004] Ammonia permease |
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| TIGRFAM ID | [TIGR00836] ammonium transporter
[TIGR03644] probable ammonium transporter, marine subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0507426 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.607723 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAACT CCATATTTGA ATTGCAGTAC GCATTAGATA CCTTTTATTT CTTGGTATGT
GGCGCACTGG TTATGTGGAT GGCCGCCGGC TTCGCAATGT TAGAAGCTGG TTTGGTTCGT
TCAAAGAATA CGACAGAAAT TTTAACTAAA AACGTTGCTC TGTTTGCTAT TGCTTGCATC
ATGTACTTTG TATGTGGTTA TGCAATTATG TACGGCGGCG ACTACTTCTT AACAACTATC
ACTGGTGATG GTGTAACTGG CGCAGAAGAG CCAGCTAGCT ATGCACCTTC TGCAGACTTT
TTCTTCCAGG TTGTATTCGT TGCTACTGCA ATGTCTATTG TGTCTGGTGC GGTTGCAGAG
CGTATGAAAC TTTGGGCTTT CTTAGCTTTC GCTGTTGTAA TGTGTGGTGT TATTTACCCA
GTGGAAGGCG GTTGGACTTG GGGTGGAAAC TCTGTATTTG GCATGTACAC CTTAGGTGAC
TTAGGTTGGT CTGACTTTGC TGGTTCCGGT ATTGTTCACA TGGCTGGTGC TGCTGCAGCG
CTAGCTGGTG TATTAGTATT GGGCGCTCGT AAAGGTAAAT ACGGCCCGAA CGGTCAAATC
AACGCGATTC CTGGTGCAAA CTTACCTTTA GCTACTTTGG GTACTTTCAT CCTGTGGATG
GGTTGGTTCG GCTTTAACGG TGGTTCTGTA TTGGCTACCG CTTCTGTAGA AAGCGCTAAC
TCAGTAGCAA TCGTATTTAT GAATACCAAT GCTGCCGCTG CAGGTGGTTT AGTATCTGCA
CTTATCTTGG CGCGTATACT GTTTGGTAAA GCTGACTTAA CTATGGCTCT AAACGGTGCA
TTGGCAGGCT TGGTTGCTAT TACTGCAGAG CCTTCAACCC CATCTGCTTT ACAAGCTACT
TTGTTTGGCG GCCTAGGTGG CTTGTTGGTT GTATTCAGCA TTCTTACTTT AGATAAGCTA
AAAATTGATG ATCCTGTGGG CGCTATCTCT GTTCACGGTG TAGTTGGTTT GTTGGGCTTG
TTGTTAGTAC CTGTTACTAA CGATGCTTCT AGCTTCAGCG GTCAAATCAT TGGTGCATTA
ACTATCTTCA CTTGGGTATT TGGTACTAGC CTAGCTGTTT GGTTCTTAAT CAAACTAGTG
ATCGGTGTAC GCGTAAGCGA AGAAGAAGAG TTCGAAGGTG TGGATCTTTC CGAGTGCGGA
ATGGAAGCCT ACCCAGAATT CACCAATGGC AAATAA
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| Protein sequence | MENSIFELQY ALDTFYFLVC GALVMWMAAG FAMLEAGLVR SKNTTEILTK NVALFAIACI
MYFVCGYAIM YGGDYFLTTI TGDGVTGAEE PASYAPSADF FFQVVFVATA MSIVSGAVAE
RMKLWAFLAF AVVMCGVIYP VEGGWTWGGN SVFGMYTLGD LGWSDFAGSG IVHMAGAAAA
LAGVLVLGAR KGKYGPNGQI NAIPGANLPL ATLGTFILWM GWFGFNGGSV LATASVESAN
SVAIVFMNTN AAAAGGLVSA LILARILFGK ADLTMALNGA LAGLVAITAE PSTPSALQAT
LFGGLGGLLV VFSILTLDKL KIDDPVGAIS VHGVVGLLGL LLVPVTNDAS SFSGQIIGAL
TIFTWVFGTS LAVWFLIKLV IGVRVSEEEE FEGVDLSECG MEAYPEFTNG K
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