| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0086 |
|---|
| Symbol | |
|---|
| ID | 3967325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 107529 |
|---|
| End bp | 108044 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637919145 |
|---|
| Product | periplasmic nitrate reductase subunit NapC |
|---|
| Protein accession | YP_525562 |
|---|
| Protein GI | 90019735 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
|---|
| TIGRFAM ID | [TIGR02161] periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGGT TTGTTGCCGG TATTATTTTC TGGGGTGGCT TTAACACTGC GCTAGAAGCA
ACCAATACCG AAACGTTTTG TATTTCGTGT CACGAGATGG AAAACAACGT GTATCAAGAG
TTACAAGCTA CCATTCACTT TAGTAACCGC TCAGGCGTGC GCGCTACGTG TCCAGATTGC
CACGTACCGC ACGAGTGGAC CGATAAAATT GCACGCAAAA TGCAAGCTTC CAAAGAGGTA
TGGGGCAAAA TATTCGGTAC GATTAATACC CGCGAAAAAT TCGAAGCTAA ACGTTTAGAA
TTAGCGCAGC ACGAATGGGC ACGGCTTAAA GCTAACGACT CGTTAGAGTG TCGCAACTGC
CACAACTTTG AATATATGGA TTTCACTCGT CAAAGTGCGC GCGCATCGGT TCAACACAGC
ACGGCCTTAG CTGCAGGCGA AAAAACATGT ATCGATTGCC ATAAAGGTAT TGCTCACCAC
TTGCCTAATA TGAAGGGCGT TGAGGGTTGG CAGTAA
|
|---|
| Protein sequence | MGGFVAGIIF WGGFNTALEA TNTETFCISC HEMENNVYQE LQATIHFSNR SGVRATCPDC
HVPHEWTDKI ARKMQASKEV WGKIFGTINT REKFEAKRLE LAQHEWARLK ANDSLECRNC
HNFEYMDFTR QSARASVQHS TALAAGEKTC IDCHKGIAHH LPNMKGVEGW Q
|
|---|
| |