Gene Sde_0073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0073 
Symbol 
ID3967157 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp92145 
End bp94925 
Gene Length2781 bp 
Protein Length926 aa 
Translation table11 
GC content51% 
IMG OID637919132 
ProductDNA polymerase I 
Protein accessionYP_525549 
Protein GI90019722 
COG category[L] Replication, recombination and repair 
COG ID[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains 
TIGRFAM ID[TIGR00593] DNA polymerase I 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.800167 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAATT CGTCGCTACC GCTACTTCTT GTTGATGGCT CTTCGTATTT ATATCGAGCT 
TTCCATGCAA TGCCGCCACT TACCACCTCC AGTGGGCAGC CCACGGGCGC GGTGCGCGGA
GTAGTTAATA TGTTGCGCAA GCTCGCCAAG GATTACCCCG AAAGCCCAAT AGCAGTAATT
TTTGACGCCA AGGGCAAAAC CTTCCGCGAT GATATTTATA GCGATTACAA AGCCAATCGC
CCGCCAATGC CCGATGATTT GCGCGCACAA ATTGAGCCGT TACACACCAT TATTCGCGCA
ATGGGCTTGC CGCTTATTAT TCAAGATGGG GTAGAAGCCG ACGATGTAAT TGGTACTTAC
GCCCAACAGG CCACCGAAAA AGGCATACCG GTTGTGGTAT CTACTGGCGA TAAGGACATG
GCGCAGTTAG TCAGTGAGCA CGTAACACTT GTGAACACCA TGACCGAAAC CGTCATGGAT
ATTGCCGGTG TTAACGAAAA ATTTGGTATT CCGCCTTCGC TAATTATCGA TTTCTTGGCG
TTAATGGGCG ATAAGGTCGA CAATATTCCT GGCGTGCCCG GCGTAGGTGA GAAAACAGCC
TTAGCGCTAC TGCAAAACTT AGGCAGTGTA GAAGATATTT ACGCCAATTT AGACAAGGTA
CCCACCTTAG AGGTGCGCGG TGCAAAATCG TTGGCGAAAA AGCTCGAAGA TAATCGCGAC
AAAGCGTTTT TATCGTACGA GCTGGCAACC ATCAAACTAG ATGTAGAGCT AGAGCACAGC
CTTGAAGAGT TAATTCCCGT CGACCCAGAC AACGATGCGT TGCTGGCCTT GTTTACCGAA
CTGGAATTTA AAGGTTGGGT TACCGAGCTC TCGAAAGGGG GCGGCACTAA AGCCAAAAAA
GCTAGCCCCA ACGCTAAGCA GGCAGCAGAA GAGGCGCCAG CCGCCGCGCC CGAAGAAGCC
GTAGAAATTA ACCGCGATAA CTACGAAACC ATCTTAACCG AAGCCAGCTT AGAGGCGTGG
GTAGACCGCC TAAGCAAAGC AGAGCTGTTC GCGTTTGATA CCGAAACTAC CAGCCTTAAC
TATATGGAAG CTAAAGTGGT GGGTGTTTCG TTTGCTGTGG CCCCGGGAGA GGCCGCCTAT
GTGCCGTTTG GACACGATTA CTTGGGCGCG CCAGAGCAGC TAAGTGAAGA GCAAGTGCTG
GGTAAGCTAA AGCCGTTACT TGAAGACGAA AATGTTAAGA AAGTCGGCCA AAATCTTAAA
TATGACGCAA GTGTGTTGGC AAATCACGGT ATTGCCCTGC AGGGTATAGC GTTCGATACC
ATGCTGGAAT CTTACGTGGT GAACTCCACC GCCAACCGTC ACGATATGGA TACCCTTGCG
CTGGCGCATT TAGGTCACAC CAATATTTCA TTTGAAGAAA TTGCCGGTAA GGGCGCTAAG
CAACTTACTT TTAACCAAAT TCAACTCGAC CAAGCCGCAC CTTACGCCGC CGAAGATGCC
GACATAACTC TGCGTTTGCA CCAAGCGCTA TGGCCACAAG TGGAGGCCGT AGAAGGAATA
AAGTCTTTGT TCGAAAATGT CGAGCTGCCG TTGGTGCCGG TGTTATCTAA GGTAGAGCGC
ACAGGCGCAT TAATTGATGC CACTATTCTC GGCCAGCAAA GTGCCGAGCT GGCCGCCGAC
TTAGAGCGCA TTCAACGCGA GGCGTGGGAA TTGGCCGGTG AAGAGTTTAA TTTAGCCTCG
CCCAAACAAT TGGGTGTAAT TTTGTTCGAA AAGCTGGGCA TCCCCGTTAT TAAAAAGACG
AAAACCGGCG CCCCCTCAAC CGCAGAAGAA GTGCTGCAAG AGCTGGCTTT AGATTACCCC
TTGCCCGCAC TGTTACTGGA GCAGCGCGGC TTGGCGAAGT TGAAATCTAC TTATACCGAC
AAGCTGCCAA CCATGATTAA CCCCCATACT GGGCGGGTGC ATACATCCTA TAACCAAGCA
GTAACGGCGA CTGGGCGGTT AAGTTCTACC GACCCCAATT TGCAGAATAT TCCTATTAAA
ACCGAAGCTG GGCGGCGTGT GCGCAAGGCG TTTATCGCCC CCGAGGGTTA CCGCATAGTC
GCGGCTGACT ACTCGCAAAT TGAATTGCGC ATTATGGCGC ACCTATCGGG CGACGAAGGA
TTAACCAACG CGTTTAACCA AGGGTTGGAT GTGCACAGTG CCACTGCCGC CGAAGTATTT
GGCACCAGTG TAGAGAGCGT TACCCCAGAG CAGCGCCGCA GCGCCAAAGC CATTAACTTT
GGGCTTATAT ACGGCATGTC GGCGTTTGGC TTGGCGCGCC AGCTGCACAT TGGTCGCAAT
GATGCCCAGC GCTACATAGA TACCTATTTC GATCGCTACC CTGGTGTTGC ACGCTATATG
GAAGATATTC GTGTATTCGC GAAGGAGCAT GGCTACGTAG AAACGTTAAT GGGCCGCAGG
TTGTATTTGC CAGAAATTAA CGCCAGTAAC GGTATGCGCA GGCAGGCGGC AGAGCGCACC
GCAATCAACG CGCCCATGCA AGGGTCTGCG GCAGATATCA TCAAAAAAGC GATGATTGAC
GTCGATAAGT GGCTATCTAC CCTAAAAGTA GACGCGAAAA TGATAATGCA GGTACACGAT
GAATTGGTGC TAGAGGTTGC CGAAGACCAA ATAGAGCCAG TAACCGCCAC CCTGTGCGAT
ATTATGTCGG CAGCGCTTAA GTTAGATGTA CCGCTATTGG TTGAAGCCGG TGTGGGGATG
AACTGGGATG AGGCGCACTA G
 
Protein sequence
MSNSSLPLLL VDGSSYLYRA FHAMPPLTTS SGQPTGAVRG VVNMLRKLAK DYPESPIAVI 
FDAKGKTFRD DIYSDYKANR PPMPDDLRAQ IEPLHTIIRA MGLPLIIQDG VEADDVIGTY
AQQATEKGIP VVVSTGDKDM AQLVSEHVTL VNTMTETVMD IAGVNEKFGI PPSLIIDFLA
LMGDKVDNIP GVPGVGEKTA LALLQNLGSV EDIYANLDKV PTLEVRGAKS LAKKLEDNRD
KAFLSYELAT IKLDVELEHS LEELIPVDPD NDALLALFTE LEFKGWVTEL SKGGGTKAKK
ASPNAKQAAE EAPAAAPEEA VEINRDNYET ILTEASLEAW VDRLSKAELF AFDTETTSLN
YMEAKVVGVS FAVAPGEAAY VPFGHDYLGA PEQLSEEQVL GKLKPLLEDE NVKKVGQNLK
YDASVLANHG IALQGIAFDT MLESYVVNST ANRHDMDTLA LAHLGHTNIS FEEIAGKGAK
QLTFNQIQLD QAAPYAAEDA DITLRLHQAL WPQVEAVEGI KSLFENVELP LVPVLSKVER
TGALIDATIL GQQSAELAAD LERIQREAWE LAGEEFNLAS PKQLGVILFE KLGIPVIKKT
KTGAPSTAEE VLQELALDYP LPALLLEQRG LAKLKSTYTD KLPTMINPHT GRVHTSYNQA
VTATGRLSST DPNLQNIPIK TEAGRRVRKA FIAPEGYRIV AADYSQIELR IMAHLSGDEG
LTNAFNQGLD VHSATAAEVF GTSVESVTPE QRRSAKAINF GLIYGMSAFG LARQLHIGRN
DAQRYIDTYF DRYPGVARYM EDIRVFAKEH GYVETLMGRR LYLPEINASN GMRRQAAERT
AINAPMQGSA ADIIKKAMID VDKWLSTLKV DAKMIMQVHD ELVLEVAEDQ IEPVTATLCD
IMSAALKLDV PLLVEAGVGM NWDEAH