Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0056 |
Symbol | |
ID | 3965364 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 62662 |
End bp | 70701 |
Gene Length | 8040 bp |
Protein Length | 2679 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637919115 |
Product | hypothetical protein |
Protein accession | YP_525532 |
Protein GI | 90019705 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01901] filamentous haemagglutinin family N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.602314 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTAGCTG GCGATATCGC CTTAGATGAA AGCGTGCAGG GCCAATTTAA TATTCAGCAA AACAGCGAAC GCGCTGTTAT TAATTATCAA AACTTTTCTA TTGGCCAAGG CGAAGCCGTT AATGTGGTGC AGCCGGGCGA AAATGCTGTG CTATTAAACC GCGTTGTGGG CAACAACCTT AGCCAAATTG CCGGCGCCCT GAATGCCAAC GGCCAAGTAT TTTTGGTTAA CCCACAGGGC GTAATGTTTG GTGGTGGCGC GCAGGTAAAT GTGGGCGGCC TGTTGGTAAG CACGGTAGAT ATCAATACCG AAGCGTTTAT GACCGGCGGC TTGGTACCTG CAGACTCGGC AGCCAATTCA AACCCAGCGG CCAGCATTGT TAACAACGCA GACATAACTG CAACCGGTGC AAATGGCGTG GTTTTTGTTG CCCCAATTGT AGAGAACAAC GGCAAAATTG AGGCTATTGG TGGCGACATT AGATTATCTA CTGGTAATGG CGTATTTGCC CAAGTAGACG GCAGCCCCAT AAGTATTCTG TTAGATAGCC CCCATCAAGG GGGACTAAGT CTTGGTGGGG CAGGTCAAGG TGGGGCAGGT CAAGATAACG CAGGGCAAGC TAGTGCAAGC GGCAGCAATA TCACCAACCA TGGCACATTG CGCGCCCAGC GCATTAGTGA GCAGGGTGGC AATATTGTCC TTGTGGCCGA GCAGGGCGAC GCCATCAATA TGGGCACTAT GGATACCGCA GCAACCGCCA TTGGTGGCGC GGGGGATATT ACTGTTCAGG CAAATCGCAT TGCACAGTTT GGCGCTATAA CCAGTCAGGC GGGTGCCAAT CAAGGCGACG GCGGCAATGT GAATTTGCAG GGTGCCAATT TGGTAGAAAT AGGCTCGCAG GCCACGACCA ATGTATCGGC CCACAATGGC GAGGCCGGTA GCGCGGTGTT TTTCTCCCCC AACACCACGG TTATGCATGT GGGCGCGCAG GTCAATGCCA GCTCGGTAGA TGGCCGCGGG GGCTATGTGG ATGTTTCTGG CCTAAAGCAT GTGGATGCAC TGGGCAGAGT AAACGTGGCC AGTGGCGTAG GTGAGCACGG TACTTTTCTT ATCGACCCCG ACGATATCAC CATAACCACC GTAGATAACC TAGTAACAGC AGCCACGCCT TTTCAGTCTT CCGCGTCGGG TAGTTCCACC TTAGATGTCG CCACCTTAGA GGCCGCGCTA AGTGGCGGTG GCAACATAGA GGTGCGCACT GATGTGGAAT TTGGCGATGG TGAAAGTGGC CATATAACCG TTGATAGCAA TATCGATTTA GACGGTAGCA ACGGCGGCAG TTTATCGCTG GTGGCGGATG GCAATATTAT CGTGTCGGCA GGTGTTGTTA TCGCCGATCA AACAACAGCC ACAGTAGATA ATACCAACAT AAATTTTACC GCCGGTGGCG CCATTACCAT GCCCGATACC AGCCGTGTAG AGGCGGGCAC TGGGCTAATA AACTTTACCG CGGGTAGCAG CATTCAAGTT GGCAGCCTCA CCAGCAATAG TACGGCAGCT AACGCCATTA CATTAATAGG GGTAAGTGTT GTAGATGGCG GCGATACCGA TATAGATTTA ATTGCCCCTA ACGGTGGGGT AACTATAAAT GCAGTAAGCA ACGTGGGCAG CGCAAGTTAC ATAGAAACCA ATATAAGCCA GCTTACAATT ACCATGGCTG GCGCCGCGCC CGTACGCATA TTAGAAGTAG ATGACCTGCA AATTACCTCG CTTACCAATG GCCAAAATAT CGACCTCTGG CTGCAAAGCG GCACCCTTAC CATCGACGAC CCAGGCATAA GTGCATCGGG CAACATGAGC ATAATTGCCG ACGACCTAAC TGGTGATTTG GGGCGCACGC TTACCCTTGG GGCGAACCAG CTTTGGCTGG ATATAGCCAA CCCTGCAGCC CTAACAACTA TTAACACAAC CGTTACCAGT TTAGATGCGC GGGCGGGCGG TGCGGGCTTA GATATTATTA ATACCGGCGC CCTAACCATT AGCGATGGCG CTTTGGATGT CGATAGCAGT GGGGTATCGC TAGAGGGCAG CTACCTCGCC GTGCGCACAG CCGCGGGCGA TTTAACATTG GCCTCCAATA TAGATTTAGA CGGCGGCAAT GGCGGCACCT TGATATTAGA TGCCGGCGCA GACCTTATAT TGCCTGCTTC ATGGCAAGTA TCTGACCTTA CCCCTGGCAC TGTGGATAGC GTCGCGCTGG AATTACACAC CGCCAATAAT CTCACCCTAG ATACAAATGT AACGGTAGAT GTTGGCGGCG GCACGCTGTT GGTTAATAGC GGTGGCGACC TAACCGTAAC CGGGCTTAGC TCCACCAGTG CCGCCAACAA TGCCATAAGC TTAACCGCTG CCGGCACCAT TAACGATGCC GGTGATGCCG CAACCGACCT AAGCGCCATT AACGGCGGCA TAGTACTTAG CGCCGCTACT GGCATACCAG ATTTAGAAAT AGAAGCGGCC AATCTTGCGC TTACCAATAG CACGTCGGGC GACGTAACGC TGCATCAACA AAACAGCGCC GACCTTACCA TTAGTATTTT ATCTACCGTT GCAAATTTTA CTCTCGATGG TGTTACGCAA CTTACCCTTA CCGATGCAGC TAACAGCGTA GGTGGCGATG TAAACATTAC CACCTTAGGC GCAGGTGCCT TTACCTTGCC TAACACAGGC ATAACCACAA CCGGTGCCAT TACGCTGGAT GTATTCGATA TAAGCGACAG CGATAATACC GTACTTTTAA ATGGCGCCAG TGGTGCACTA ACTTTGCGTG GCTTAACGAC GGCCACGCAA CTTAACACTA ATTTCTCGGA TTTAACTTTT TCGTCGCCAG CCGCAAGCGC AATTAGTTTT GTAAATAGCG GTGCGCTAAA CGTAAACAGC TTTGCTGCAG GTGGCGATAT TACCTTAACT ACCAGCAGCG GCGATTTAGT ATTTACCAGC AACGTCGATA CCAACGGCAG CGATGGCGCC ACCTGGAACT TTACTGCGGC CAACAATTTA GACTTAGCCG CCGCAGTGCG CTGGGAAGAT TCGGCTACAG CATCACCTGA TAGTATTACG CTACAGCTAA CAGCAGGTGG CGCTCTGTTG GCCAACGATA TAGACATGCT AGATATAGGT GCAGGCACAG CATTAATTAA CACCAGCGGG GTAGCGCAAA TATCGCGTCT TACCACCAGT TCTGCTTCTG CTAACGCAAT AGTAATTAAC GCAAACAGAG TGCGCGGCAA CACATCTACA ACGTCGGATT TAAGAGCCAT AAACGGCGGT ATTATTCTGA ATACAGCTAC AGGGGTAACC GGCGGTATAG GCGCTTATTT CGAAGCAGAT ACTTCGAACT TAGAAATAAA CTTAACCGGC GTTGGCGATA TATCAATCGA TTCTGGTGTT GATATGGCGC TGAGCGGTTC CGGTTTTGAT TTTCTCGATA TACGCGTAGC GGGCACCCTT ACCCTACAAG ACGCAGGCGT AATAAGTACC GGTGCAGTGG TAATTAAAGC CGAAGACGTA CAAGATACAG CCGGCAGAGC GTTAGATATA ACCGCCACCG ATTTATTTAT TCAACTAGAT GCCATGGCGG GTAACTTGGG GGTAACAACT AACGCCGCAA CCTTAGATGG CTCGGTAGCG GGCGCGGGCG ATTTTACTTT TAATACATCC GCCAGCCTAA GTTTGTTAGA CAGCGTAGAA GATACAAACA CCAACACATT TTTAACCACA AGCGGCAATA TGATACTAAG CGCAGCGGGT GATATAAGCT TAGATGCACC GCTAGATATA AATAACCAAA GCGGCTTAAC CCACAGTTTA ATTACAAATA ACGATATTAT TTTTACCACC GGCAATAATA TAAGCGATAG CGATTTCACC ATTGCCGACG ACGTAAACCT AGTGCTACAA GCCGACCGCC ATATTGCGTT GCCCGCAGGC CATTTAATAA ATACCAACGC GGGTACCATA ACCATAAATG CCAACAACAA TGCAGACGGT ACCGGTACAT TACAATTATT GGGGCAGCTT TTTACCACTA GTGCTACTAC CAGTGCAGTG GATATTATTG CCGCGCAAAT AGTGGGCGAT GCCACAACCC AAACAGAAAT AGAAGCAACC GCCGGCGGCA TACAAATAAC CGCGTTAGAT GGCGTAACTA ACCTAGATAT AGAAACCACC GCTTTAGCGC TTACCAATAC CAACAGCGGT GCGGTGACGG TAAACCAACA AAATGGTGCG AACCTTACCG TTGCAACGCT TAATAGTGTG GGCGACGTTA CATTAAACGG CGCAACTAAC CTAACCATTA CCGATGCCAG CCACAGCATA GGCGGCGATT TAAATATTGT TACCAGTGGC AACGGCGGCT TAATAGTGCC CGCAACGGGG CTAACTGCAA CGGGCGCAAT AGTATTAAAT GTTTGGGATA TTACCGATGG CGATACTGCA GTGGCATTAA CTGCTGCCAA TGCAGACCTA ACCTTTAGAG GGTTAGGCGC AGCCACTCAA TTAAATACCA GCTTGGCGAG TTTAAATTTT AATAATCAAA CCGCTAGTAC CATAACCATT ACTAACAATG CAGCGCTTAC GCTTAATAAT TTTTCTACCC TAGGTGATAT AAACTTAAGC ACCACGGCAG GTGATTTAAC CATCGCAAAC GCCATAGACC TAGACGGCAC CAACGGCGTT AATTGGTTAT TTAGTGCAGC AAACGATTTA GACATTCTTG CCGCAAGCGT GTGGCAAGAC AGTAATACCG TCACAGCAGA TGCAACAAAT ATTTCGCTGC AAGCCGGGCA AAATATACAA ATGACAGACG GCGCTAGAAT TTATGCAGGT GCTGGCTTAA TTAATGCACT TGCAGGCAAC ACTTTATTTG TAAGCAGTTT GCAAACCGAC AGTACCCTAG CTAATGCAAT TACATTAAAT GCAGCAAGCA TTCGCGACTT TGGTGATAGT CACTTAGATA TTGTTGCCGC CAACGGTGGC GCCAACTTAA CGGCAACGGT GGATATTGGC GATGTGAGCT CTATCGAAAC AGAATTAAAC AGCGCCGCCA TTACAATGGC TGCGCCAGGC CCTGTGCGGT TAGTAGAGCT AAACGATTTA AACCTAACTA GTTTAACCAA TGGCACCGAT GTATTTGTTT ACGTACCCAA CGGTTTGCTA ACTGTAGATG CCGCAGGCGT GGCGGTTATT GGCGAACTAA ATATATTAGC CGACGATATT ACCAGCAGCA CCGGCCGTAC ACTTACGTTA AGTGCAAACA CGGCGTTTTT AGATATTACC AACCTAGGCG CCACCACATT ATTTAACACA ACGTTTAATC GTCTAGATGG CACCGTAGCA GGCAGTGATT TCATATTAAT TAATAACGGC GCACTAGAGT TAATAGATTT AGTTAACGAC ACTAACGCAA CAGCCTTTAG TGTTACCTCT GGCGCTATGA ATCTATCTAC CCTAGTTGGC GATATAACCC TAACCAACAC AATAGATTTA GACGGCGCCA ACGGCCAAAC CCTACAACTA ACAGCCGCAA ACGATATTGT GTTTGCCAAC GCGACTCAAA TTAGCGACCA AACACCCGCC ACTACCGATA ATGTAAATGT GCAACTTACC GCGGCGAATA CAATTAGCCT AAACAATAGC AATAGCATTA ATGTAAGTGG CGGTACGTTA TTACTTAATG CCGGTAATCA ATTAACGGTA ACCGGGCTAA GCTCTACCAG CACAGCGAGC AACGCAATTG AATTAATCAC TAACGGTTTT ATAGATGACG GCGGCGAAGG CATTATAGAT ATTACGGCTA CTAATGGCGG TGTAGTGCTT AGCAGTGCAA CCAGCGTTAT AGATAGCGGA GATGAATTTT TAGAAATTAG CAGCTCGCAG CTAGCAATAA ATCAAACCGC AGCAGGCAGT GCAAATATTT ATGTCGACCA AGATGTTGCA CTTACCGCAA CAGGCCTAGA TGCATTAAGG CTGCGAGCAG ACGGCACAGT CACTATTGAA GATGCAGGCT TAAGTGCAAG TTCAGATGTG GCGATATTTG CCGCCGACCT AACCGACGGC GCAGGCCGCG AAGTAGACAT TGCAGCTAGC GATTTATACT TAGAGCTAAC AGACTTGGTG GCCGATATAA TTGTGAATGC CAACGCAACC AACCTAGATG CCACAATAGA TGGCAGCGGC GGCGTTACCG TTAATGCTCC AGCCGACCTT ACATTATTTG ATAGTAGCGA AGATGCCCTT AATAACTCCA TTATTGCGCG CAGTGGTAAT GTAACCGTAA ACGCGGGCAA TAATTTAACG GTAGCTAACG ATTTACACGT GGATGATCAA TCTGGCCAAG TGTTAACTTT ATTTGCCGGT AACGATTTAA TGTTTACCAC CGGTGCAAAT ATTGTAGATG GCAGCGCAGG CGCACCCATA GATAACATTG CCATAAGCTT AGCGGCCAAT CGCCATATTC AATTACCAAA CGCAACTATA AATAGCTACG GCGGCACCAT TGCTATTACT GCCGACCAGG ATGCCAATGG CAGCGGCGAT GTAACGCTCG ACGCTCAACT TATTTCCACT AGCACGGCAA ACAACGCTGT AACTATTGCA GGGGTGAATA TTGTTGGCGA TAGCAGCAGC GATGCCGAAA TAGTAGCCTC GGCAGGTGGT GTAGAGCTAA CTGCAAGTGG CAATATTCTT GGCCAAGGTG CAAACCAATT TTTTGATGTA GATTCAGCAA GGCTTGCTAT TACAAATGTG GGCGGTGAGC TGCGTTACCA CGCTATAAAT AGCGTAACCT TATTAGCAGC AAATAATTTA ACCGATGCTA ATTTTCAAAT AGACGGCACC TTTACTGTGC CAGATACCGG CTTGCAAAGC AGTGCTGGGT TGCTGGCTGT AACCGCAACC GATTTAATTG ATAGCGATAG AAATACAACC ATTAACGGCG AGAATTTTTT ATTAGCGCTT AGCAATCCCA TTGCTGCCAC CACGTTAACA ACAAGTATAG ATAGCGCAGA TATCACCTTA CCGAATCAAA CCCTTACCCT AAACGAAACC AACGGCTTAA TTCTTAGCGA CTTAAATGCC GATGGCAACG CGCTGCTAAT AAACAATGGC AATGCGGCTA TAAATATTGC CACAGGTGAT TTACGCATAG CCAATAACGT AAGCCTTAGC GATACCCTTG CCAATGGCAC GCGCACAGGT TTATTTGAGG CCACTGTAAG TAACGGCAAT ATAAATATTA GTAACGACGG CATAGGCAGT ACCGTGGTGG TGCAATCCAC CAATACTGTC GATCAAACCG CGGAGGGTGG TTTGGGTGCC GGCTTTAATG GCAACCCTTC GCAAACATCT ATACGGTTTG AATTGCCAAA CAACGGCGCT CAAACGCGTA CCATTACAAT TGGCAGCGCC GATTCGCAAG CAAGCGTGAT TGCGGTGGGG GGTGATATAG AAATAGATGG TTTGGGCGCA GGCGTTGCCA ATGTGCAATC GAGCAGCGTG GTGGTGTTGG CCAGCGCTTC GCAATTAACA AGTTACAACC AAGTAGACGA TGCATTGGAC GGTACTTTAC TGCTTAACGG TTTGGCTACT TCATCTGATG CCATCTCCGA TACCAACCGC TTAGCGCGCA CCGGCCGCAC CATTGCAATA CGACCAGATA GTTTTGTGCT GCCAGAACCA GAACCAGAAC CAGAACCAGA CCCAGACCCA GAACCTACAC CCTCGCCAGA GCTACCCATC GAAAACGTGG TAGAGGTGGT AAACGACATG CAAGAAAACA TAAATGCCGA TGCTACGGTG CAACCGCAAC CAGAGAAGAA AGACGATGCC GACCAAGCGT TTGATGAATT GTATAGCTCG TCAGATTGCA GTGACCCAGA CAAAAAAAAT AAAGGCCACT GCGCAATTGA ATCTGCCGTT AAAAACTTTT TATCCCATTG GACAGTAGGC GGCCAGCTGC CGCCAAAAGT AATTCGCTAA
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Protein sequence | MVAGDIALDE SVQGQFNIQQ NSERAVINYQ NFSIGQGEAV NVVQPGENAV LLNRVVGNNL SQIAGALNAN GQVFLVNPQG VMFGGGAQVN VGGLLVSTVD INTEAFMTGG LVPADSAANS NPAASIVNNA DITATGANGV VFVAPIVENN GKIEAIGGDI RLSTGNGVFA QVDGSPISIL LDSPHQGGLS LGGAGQGGAG QDNAGQASAS GSNITNHGTL RAQRISEQGG NIVLVAEQGD AINMGTMDTA ATAIGGAGDI TVQANRIAQF GAITSQAGAN QGDGGNVNLQ GANLVEIGSQ ATTNVSAHNG EAGSAVFFSP NTTVMHVGAQ VNASSVDGRG GYVDVSGLKH VDALGRVNVA SGVGEHGTFL IDPDDITITT VDNLVTAATP FQSSASGSST LDVATLEAAL SGGGNIEVRT DVEFGDGESG HITVDSNIDL DGSNGGSLSL VADGNIIVSA GVVIADQTTA TVDNTNINFT AGGAITMPDT SRVEAGTGLI NFTAGSSIQV GSLTSNSTAA NAITLIGVSV VDGGDTDIDL IAPNGGVTIN AVSNVGSASY IETNISQLTI TMAGAAPVRI LEVDDLQITS LTNGQNIDLW LQSGTLTIDD PGISASGNMS IIADDLTGDL GRTLTLGANQ LWLDIANPAA LTTINTTVTS LDARAGGAGL DIINTGALTI SDGALDVDSS GVSLEGSYLA VRTAAGDLTL ASNIDLDGGN GGTLILDAGA DLILPASWQV SDLTPGTVDS VALELHTANN LTLDTNVTVD VGGGTLLVNS GGDLTVTGLS STSAANNAIS LTAAGTINDA GDAATDLSAI NGGIVLSAAT GIPDLEIEAA NLALTNSTSG DVTLHQQNSA DLTISILSTV ANFTLDGVTQ LTLTDAANSV GGDVNITTLG AGAFTLPNTG ITTTGAITLD VFDISDSDNT VLLNGASGAL TLRGLTTATQ LNTNFSDLTF SSPAASAISF VNSGALNVNS FAAGGDITLT TSSGDLVFTS NVDTNGSDGA TWNFTAANNL DLAAAVRWED SATASPDSIT LQLTAGGALL ANDIDMLDIG AGTALINTSG VAQISRLTTS SASANAIVIN ANRVRGNTST TSDLRAINGG IILNTATGVT GGIGAYFEAD TSNLEINLTG VGDISIDSGV DMALSGSGFD FLDIRVAGTL TLQDAGVIST GAVVIKAEDV QDTAGRALDI TATDLFIQLD AMAGNLGVTT NAATLDGSVA GAGDFTFNTS ASLSLLDSVE DTNTNTFLTT SGNMILSAAG DISLDAPLDI NNQSGLTHSL ITNNDIIFTT GNNISDSDFT IADDVNLVLQ ADRHIALPAG HLINTNAGTI TINANNNADG TGTLQLLGQL FTTSATTSAV DIIAAQIVGD ATTQTEIEAT AGGIQITALD GVTNLDIETT ALALTNTNSG AVTVNQQNGA NLTVATLNSV GDVTLNGATN LTITDASHSI GGDLNIVTSG NGGLIVPATG LTATGAIVLN VWDITDGDTA VALTAANADL TFRGLGAATQ LNTSLASLNF NNQTASTITI TNNAALTLNN FSTLGDINLS TTAGDLTIAN AIDLDGTNGV NWLFSAANDL DILAASVWQD SNTVTADATN ISLQAGQNIQ MTDGARIYAG AGLINALAGN TLFVSSLQTD STLANAITLN AASIRDFGDS HLDIVAANGG ANLTATVDIG DVSSIETELN SAAITMAAPG PVRLVELNDL NLTSLTNGTD VFVYVPNGLL TVDAAGVAVI GELNILADDI TSSTGRTLTL SANTAFLDIT NLGATTLFNT TFNRLDGTVA GSDFILINNG ALELIDLVND TNATAFSVTS GAMNLSTLVG DITLTNTIDL DGANGQTLQL TAANDIVFAN ATQISDQTPA TTDNVNVQLT AANTISLNNS NSINVSGGTL LLNAGNQLTV TGLSSTSTAS NAIELITNGF IDDGGEGIID ITATNGGVVL SSATSVIDSG DEFLEISSSQ LAINQTAAGS ANIYVDQDVA LTATGLDALR LRADGTVTIE DAGLSASSDV AIFAADLTDG AGREVDIAAS DLYLELTDLV ADIIVNANAT NLDATIDGSG GVTVNAPADL TLFDSSEDAL NNSIIARSGN VTVNAGNNLT VANDLHVDDQ SGQVLTLFAG NDLMFTTGAN IVDGSAGAPI DNIAISLAAN RHIQLPNATI NSYGGTIAIT ADQDANGSGD VTLDAQLIST STANNAVTIA GVNIVGDSSS DAEIVASAGG VELTASGNIL GQGANQFFDV DSARLAITNV GGELRYHAIN SVTLLAANNL TDANFQIDGT FTVPDTGLQS SAGLLAVTAT DLIDSDRNTT INGENFLLAL SNPIAATTLT TSIDSADITL PNQTLTLNET NGLILSDLNA DGNALLINNG NAAINIATGD LRIANNVSLS DTLANGTRTG LFEATVSNGN INISNDGIGS TVVVQSTNTV DQTAEGGLGA GFNGNPSQTS IRFELPNNGA QTRTITIGSA DSQASVIAVG GDIEIDGLGA GVANVQSSSV VVLASASQLT SYNQVDDALD GTLLLNGLAT SSDAISDTNR LARTGRTIAI RPDSFVLPEP EPEPEPDPDP EPTPSPELPI ENVVEVVNDM QENINADATV QPQPEKKDDA DQAFDELYSS SDCSDPDKKN KGHCAIESAV KNFLSHWTVG GQLPPKVIR
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