Gene Sde_0044 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0044 
Symbol 
ID3965352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp49405 
End bp50316 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content45% 
IMG OID637919103 
Productprotoheme IX farnesyltransferase 
Protein accessionYP_525520 
Protein GI90019693 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) 
TIGRFAM ID[TIGR01473] protoheme IX farnesyltransferase 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAAC AAGCAAGCAT TTCGAATCAC GATGTGGCAG GATGGCGCGA CTACCTAGAG 
TTAACTAAAC CTAATGTAGT TGCACTTATG TTACTTACCT CTTTAATTGG CATGTTGCTC
GCAGTGCCGG GTATGGTACC AATCGATATT CTTATTTTAG GCAACTTAGG CATAGCGCTA
TGTGCTGGCT CTGCCGCAGC GGTAAACCAT TTAGTAGATA GAAAAGTCGA TTTGAAAATG
GCGCGCACAT TTAATCGCCC CATTGCCAAG GGCAGAATTG ATCCAACTAA AGCGATACTT
TTCGCCGCGA TATTAGGTTT GGCGGGCATG GCCATTTTAA TGGTTTGGGT AAACCACTTA
ACCGCTTGGT TAACGCTGGC TTCGCTAGTT GGCTACGCTT TTATCTATAC TTTTTGGCTT
AAACGCGCGA CCCCGCAAAA CATTGTTATA GGCGGCCTTG CAGGTGCGGC GCCACCATTA
TTAGGTTGGG TTGCGGTAAC GGGTGAAGTG CACGGCCACG CACTGTTACT AGTGCTAATA
ATATTTGCTT GGACACCGCC ACACTTCTGG GCGCTAGCCG TTCACCGCAA AGAAGAATAC
GCCAACGCAA AAATACCTAT GTTGCCCGTT ACCCACGGTG AGGCCTACAC AAAAATCCAA
ATACTGCTGT ATACCTTTAT TCTTATTGCT GTAACGCTAT TGCCCTATGC AACGCATATG
TTAAACGAGT TGTATTTGTT AGGTGCGGTG GTATTGGGTA TTGGTTTTTT ATATTACGCC
GTAGCCATGA TGCGCAACAA AAATAAAAAT GCGGGTATGG ACGCATTTAA ATATTCGATT
GTTTACCTAA TGGCACTTTT TGTGGTTATG CTGTTAGACC ATTATTTACT ACCCACAAAC
ATTGTGAGCT AA
 
Protein sequence
MTEQASISNH DVAGWRDYLE LTKPNVVALM LLTSLIGMLL AVPGMVPIDI LILGNLGIAL 
CAGSAAAVNH LVDRKVDLKM ARTFNRPIAK GRIDPTKAIL FAAILGLAGM AILMVWVNHL
TAWLTLASLV GYAFIYTFWL KRATPQNIVI GGLAGAAPPL LGWVAVTGEV HGHALLLVLI
IFAWTPPHFW ALAVHRKEEY ANAKIPMLPV THGEAYTKIQ ILLYTFILIA VTLLPYATHM
LNELYLLGAV VLGIGFLYYA VAMMRNKNKN AGMDAFKYSI VYLMALFVVM LLDHYLLPTN
IVS