Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0044 |
Symbol | |
ID | 3965352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 49405 |
End bp | 50316 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637919103 |
Product | protoheme IX farnesyltransferase |
Protein accession | YP_525520 |
Protein GI | 90019693 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAGAAC AAGCAAGCAT TTCGAATCAC GATGTGGCAG GATGGCGCGA CTACCTAGAG TTAACTAAAC CTAATGTAGT TGCACTTATG TTACTTACCT CTTTAATTGG CATGTTGCTC GCAGTGCCGG GTATGGTACC AATCGATATT CTTATTTTAG GCAACTTAGG CATAGCGCTA TGTGCTGGCT CTGCCGCAGC GGTAAACCAT TTAGTAGATA GAAAAGTCGA TTTGAAAATG GCGCGCACAT TTAATCGCCC CATTGCCAAG GGCAGAATTG ATCCAACTAA AGCGATACTT TTCGCCGCGA TATTAGGTTT GGCGGGCATG GCCATTTTAA TGGTTTGGGT AAACCACTTA ACCGCTTGGT TAACGCTGGC TTCGCTAGTT GGCTACGCTT TTATCTATAC TTTTTGGCTT AAACGCGCGA CCCCGCAAAA CATTGTTATA GGCGGCCTTG CAGGTGCGGC GCCACCATTA TTAGGTTGGG TTGCGGTAAC GGGTGAAGTG CACGGCCACG CACTGTTACT AGTGCTAATA ATATTTGCTT GGACACCGCC ACACTTCTGG GCGCTAGCCG TTCACCGCAA AGAAGAATAC GCCAACGCAA AAATACCTAT GTTGCCCGTT ACCCACGGTG AGGCCTACAC AAAAATCCAA ATACTGCTGT ATACCTTTAT TCTTATTGCT GTAACGCTAT TGCCCTATGC AACGCATATG TTAAACGAGT TGTATTTGTT AGGTGCGGTG GTATTGGGTA TTGGTTTTTT ATATTACGCC GTAGCCATGA TGCGCAACAA AAATAAAAAT GCGGGTATGG ACGCATTTAA ATATTCGATT GTTTACCTAA TGGCACTTTT TGTGGTTATG CTGTTAGACC ATTATTTACT ACCCACAAAC ATTGTGAGCT AA
|
Protein sequence | MTEQASISNH DVAGWRDYLE LTKPNVVALM LLTSLIGMLL AVPGMVPIDI LILGNLGIAL CAGSAAAVNH LVDRKVDLKM ARTFNRPIAK GRIDPTKAIL FAAILGLAGM AILMVWVNHL TAWLTLASLV GYAFIYTFWL KRATPQNIVI GGLAGAAPPL LGWVAVTGEV HGHALLLVLI IFAWTPPHFW ALAVHRKEEY ANAKIPMLPV THGEAYTKIQ ILLYTFILIA VTLLPYATHM LNELYLLGAV VLGIGFLYYA VAMMRNKNKN AGMDAFKYSI VYLMALFVVM LLDHYLLPTN IVS
|
| |