| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0035 |
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| Symbol | |
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| ID | 3968168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 40360 |
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| End bp | 41910 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637919094 |
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| Product | DNA-damage-inducible protein F |
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| Protein accession | YP_525511 |
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| Protein GI | 90019684 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCCTC GAAGTGTGCG ACATTTAACC GCACCGCCCG ATTATAACGG CACCTTAGGC
AATAAAGTAA GTACCGTATC CAATACTAGA TCCTTTTTTA ATAAAAAACC CAATGAATAT
CGCTATGGTC CTCGCGTAGA ATGCGATGCC GACACCCAAA GAGTACAATT AATGATCAAA
AATTGGTCTT CTCGCTGGCT CGAGCTGCCC CACAAGCAAA CCTTTGCCCT AGCTGGGCCT
ATGATTTTGG CCAATATTTC CGTACCTTTG ATGGGTTTAG CGGATACAGC CATGCTGGGC
CACTTGGACG ATGCAGCGTT TGTAGGTGCA GTTGCGGTTG GCGCCAACAT ATTTGCCTTT
ATGTTTTGGA TGATGGCCTT TTTGCGTATG GGGACCACCT CGGTGGTGGG CCAAGCGCTG
GGAGCAAACA ACCCCACTAC CGCTTTTGAT CAGCTCGCGC AAAGTGCGGC GTTAGCATTT
GGCCTAGCAG CACTACTTAT TATTACCCAC CCTTTTACCT TGCCCCTCGC AATTAGCTGG
GTAGCCGCCG ACCCGCAAGT GGCCGAGCTA GCGGCACAAT ATGCCTCTAT ACGTATTTAC
GCCGCCCCAG CGGTGCTGGG TACCTATGTG CTTAGCGGTT GGCTACTTGG CTTACAAAAA
CCGGTTTACA CGTTAATTAT TACTGTGGCG ATAAACACAA TAAATATAGC CTTAGATTAC
GTGTTTATTC TTAAATTTAA CTGGGGTAGC CAAGGTGCCG CTGCGGCCTC GGTATGCGCA
GATTACTTAG GCTTTGTAAT TGCCCTGTTT TGTTTTTACT ACAGCGCCAA GCAAATACAG
CTATTTAAGC GCGCCCCAAA TTGGCGGTGG CTAAGCGCGC TGCGGCAAGG CAATTGGCGC
AAGCTTATGG GTATAAACCG CGATTTATTT ATTCGCACTG CCATACTGCT GTTTGTGTTT
AACTTTTTTA CCGCACAAGG TGGCGACCTA GGGCAAACCA CGCTCGCCGC CAACGCCATT
CTTATTCAGC TTATGTTTTT AAGCACCTAC GCCCTAGATG GCTACGCCCA CGCAGCAGAA
ACCCTTGCCG CCAATGCCAT AGGCGCCAAA AACCTACACA AACTGCACAA CACTAGCATT
GCCGCTTGCA GTACAGCAGG GTTTATTGCG GTATTTATGG CCGTTGTGTT TTGGTTTGGT
CAGCCGTTTT TTATTTGGCT TATGACAGAC ATCCACGAAG TAAAACAGGC AGTGGCCCAG
TATTATATTT GGCTATGCAT AATGCCCATC GTGGCCGTGT GGTGCTATTT GTTTGACGGT
ATTTTTATTG GTGCGGGAAA AACGCGCGCG CTGCGCAATT GGATGCTTGC AGCCGTATTG
CTGGTATTTT TACCCAGCTG GTGGCTACTG CAACCGCTTG CCAATCACGG CCTGTGGATA
GCATTTGTGG TATTTCATAT TGCTCGCAGC ATTAGCCTAG GCTACGAATA TTATCGCTGC
ACTGTGCGCA ATAGTTGGTT TGCTACCTCT AGCAATGTGG ACGCTTGTTG A
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| Protein sequence | MHPRSVRHLT APPDYNGTLG NKVSTVSNTR SFFNKKPNEY RYGPRVECDA DTQRVQLMIK
NWSSRWLELP HKQTFALAGP MILANISVPL MGLADTAMLG HLDDAAFVGA VAVGANIFAF
MFWMMAFLRM GTTSVVGQAL GANNPTTAFD QLAQSAALAF GLAALLIITH PFTLPLAISW
VAADPQVAEL AAQYASIRIY AAPAVLGTYV LSGWLLGLQK PVYTLIITVA INTINIALDY
VFILKFNWGS QGAAAASVCA DYLGFVIALF CFYYSAKQIQ LFKRAPNWRW LSALRQGNWR
KLMGINRDLF IRTAILLFVF NFFTAQGGDL GQTTLAANAI LIQLMFLSTY ALDGYAHAAE
TLAANAIGAK NLHKLHNTSI AACSTAGFIA VFMAVVFWFG QPFFIWLMTD IHEVKQAVAQ
YYIWLCIMPI VAVWCYLFDG IFIGAGKTRA LRNWMLAAVL LVFLPSWWLL QPLANHGLWI
AFVVFHIARS ISLGYEYYRC TVRNSWFATS SNVDAC
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