| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0020 |
|---|
| Symbol | |
|---|
| ID | 3968153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 23650 |
|---|
| End bp | 24618 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637919079 |
|---|
| Product | methionyl-tRNA formyltransferase |
|---|
| Protein accession | YP_525496 |
|---|
| Protein GI | 90019669 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0223] Methionyl-tRNA formyltransferase |
|---|
| TIGRFAM ID | [TIGR00460] methionyl-tRNA formyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCAAC ACCATTCGCT TAACATTGTT TTTGCCGGCA CCCCTGAGTT TGCCGCCCGC
CATTTAGAAG CCCTACTGCA AAGCCCCCAC AATATAGTGG CAGCTTATAC CCAGCCAGAC
CGACCCAAAG GGCGCGGTAA AAAACTTACC GCCAGCCCAG TTAAAGACGT TGCCCAAGCC
GCTGGCGTAC CGGTGTACCA ACCAATCAAT TTTAAAAGCG AAGAAGATCA AGCTGCACTG
GCGGCATTAA AACCCGACAT TATGGTAGTG GTAGCCTACG GCTTGTTGTT ACCGCAAGTA
GTACTCGATA CACCTACTTT AGGCTGCATT AATGTGCACG GCTCTTTGTT GCCAAGGTGG
CGCGGCGCGG CGCCTATTCA GCGTTGTATT GAGGCGGGCG ACACCGAAAC CGGCATTACC
ATTATGCAAA TGGACGCAGG CCTAGACACA GGCGATATGT TGTTAAAAAC CGTGTGTGAT
ATTAAAGCTG ACGAAACCGC GGCCACTTTG CACGACAAGC TTGCTGAAAT GGGCCCACCC
GCATTGTTAT CGGCCCTGCA TATGCTGGCT TCCGATACCG CCGAGCCAGA AGCGCAAGAT
AACAGCCTCG CAACCTACGC CCACAAATTG CTCAAACCCG AAGCCGCAAT TAATTGGCAA
ATAGACGCCA GCGAAATACA CCGTCGCATA CGCGCGTTTA ACCCGTTCCC TATATGTAAT
AGCGAATTGC AGCCAGCCGA TGCCGAGCCA ATGGTGGTAA AAATTTATCA AGCGCAGTTA
GCCAATGGCA AGGGCGCACC GGGCGCAATA CTAAACGCCA ACAAAGCGGG CATCGAAGTG
GCCTGCGGTA GCGGCTCGAT TGTTATCACC AGCCTGCAAT TGCCCGGCAA AAAACCAATG
GATGCGGCAT CGTTTTTAAA CGGCTTTGGC CATTTGGTAA ACCCGCCCGC TCGCTTTGGC
ACACTGTAA
|
|---|
| Protein sequence | MPQHHSLNIV FAGTPEFAAR HLEALLQSPH NIVAAYTQPD RPKGRGKKLT ASPVKDVAQA
AGVPVYQPIN FKSEEDQAAL AALKPDIMVV VAYGLLLPQV VLDTPTLGCI NVHGSLLPRW
RGAAPIQRCI EAGDTETGIT IMQMDAGLDT GDMLLKTVCD IKADETAATL HDKLAEMGPP
ALLSALHMLA SDTAEPEAQD NSLATYAHKL LKPEAAINWQ IDASEIHRRI RAFNPFPICN
SELQPADAEP MVVKIYQAQL ANGKGAPGAI LNANKAGIEV ACGSGSIVIT SLQLPGKKPM
DAASFLNGFG HLVNPPARFG TL
|
|---|
| |