Gene Sde_0017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0017 
Symbol 
ID3968836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp19328 
End bp20776 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content49% 
IMG OID637919076 
Productpotassium uptake protein TrkH 
Protein accessionYP_525493 
Protein GI90019666 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00933] potassium uptake protein, TrkH family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.33585e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACTACG CCATCATTTC TAAGGTACTT GGCATACTAT TAATGCTATT TAGCTTAACC 
ATGGTGCCGC CCATATTTGT TTCATTGTTT TATAAAGATG GCGCCTACCT CAGCTTTATT
ATGGCTTTTG CCATTACCTT TAGTACCGGC GGCTTGGCGT GGTTGCCCGT CTACCGCGTG
CGACAGGATT TGCGCACCCG CGACGGCTTT TTAATTACCT CTCTATTTTG GTCGGTACTG
GGCATATTCG GTTCGCTGCC GTTTATATTG GCCGAGGCCA CCCAACTAAC CGCCGTCGAC
GCGGTGTTTG AATCTCTTTC TGGCCTCACT ACCACTGGGG CCACAGTACT TACCGGCTTA
GACTTTTTAC CTAAATCTAT TCTCTACTAC CGCCAGCAAC TGCAGTGGTT GGGGGGCATA
GGTATTATTG TTATCGCCGT GGCGGTACTG CCTATGCTAG GTATTGGTGG TATGCAGTTG
TACCGCGCCG AAACCCCAGG CCCAGTAAAA GACAGCAAAC TCACCCCGCG CATCACCGAA
ACCGCCAAGG CGCTGTTCTT TATCTATGTA AGCCTTACCC TCGCCTGCTT ATTCGCCTAT
TGGGCCGCCG GTATGAGCTT GTTCGACGCC ATAGGCCACG CTTTTGCCAC CGTCGCAATT
GGTGGCTTTT CCACCCACGA TTTAAGCATT GGCTATTTCG ACAGCCCACT TATTATGCTT
ATTTGCATGG TATTTATGGT GCTCTCTGGG GTTAACTTCG CGCTGCACTT TTACGCGTGG
CAGGCGCAAA CCATACGCCA TTACCTGCAA GACCCCGAAT TCAAATTTTA CGCATCCATG
ATTTTGCTAG GCGTGTTTAT TACTGTGAGC TATCTATTTG GCAAAGGTAC CTACGGCCTT
AGCGAAAGCG CCATAAAAGG CAGCTTCGAG CTAATCTCGG TGCTAACCAC CACCGGTTTT
GGCGTTGCGG ATTTCTCTCT GTGGCCCACC TTCTTACCTT TTTTAATTTT TATGTTTGCT
TTTATGGGCG GCTGCGCAGG CTCTACGGGT GGGGGCATCA AAATGATGAG GGTACTGCTC
ATTATGAAAC AAGGGGTGCG CGAAATTCAC CGGTTGATCC ACCCGAACGC GGTTATTCCC
ATAAAAATAG GCACCAAAAG TGTTTCAGAC AGAGTCGTAG AGGCGGTTTG GGGTTTCTTT
GCAATTTACG TAATAGCCTA CCTCACAATG ACCATTGTGT TATTGGCAAC AGATCTAGAC
TTCGTAACCG CATTTACGGC TGTGGGTGCA TGCTTGAACA ACTTAGGCCC GGGCTTGGGC
AGTGTGGCTT CCCACTATGG CGACTTAAAC TCTGCCGCCA AGTGGGTGTT GTGTTTTGCC
ATGCTGTTGG GGCGTTTAGA GGTTTTCACC CTTTTAGTGT TATTTACCCC GATGTTTTGG
CGAAGATAG
 
Protein sequence
MHYAIISKVL GILLMLFSLT MVPPIFVSLF YKDGAYLSFI MAFAITFSTG GLAWLPVYRV 
RQDLRTRDGF LITSLFWSVL GIFGSLPFIL AEATQLTAVD AVFESLSGLT TTGATVLTGL
DFLPKSILYY RQQLQWLGGI GIIVIAVAVL PMLGIGGMQL YRAETPGPVK DSKLTPRITE
TAKALFFIYV SLTLACLFAY WAAGMSLFDA IGHAFATVAI GGFSTHDLSI GYFDSPLIML
ICMVFMVLSG VNFALHFYAW QAQTIRHYLQ DPEFKFYASM ILLGVFITVS YLFGKGTYGL
SESAIKGSFE LISVLTTTGF GVADFSLWPT FLPFLIFMFA FMGGCAGSTG GGIKMMRVLL
IMKQGVREIH RLIHPNAVIP IKIGTKSVSD RVVEAVWGFF AIYVIAYLTM TIVLLATDLD
FVTAFTAVGA CLNNLGPGLG SVASHYGDLN SAAKWVLCFA MLLGRLEVFT LLVLFTPMFW
RR