| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0012 |
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| Symbol | |
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| ID | 3968831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 13508 |
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| End bp | 15580 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637919071 |
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| Product | glycine--tRNA ligase |
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| Protein accession | YP_525488 |
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| Protein GI | 90019661 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
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| TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.948293 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTATG AATTTTTAGT AGAACTTGGC ACCGAAGAGC TGCCACCTAC GGCATTAAAA
ACCTTATCTA ACGCGTTTAC CCAAGGTATT TGCAACGGTT TAGATAGCGC CAAACTAAGC
TATAGCGCAG TAGAAAGCTA CGCTACCCCT CGCCGCTTGG CTGTATGGGT AAAAGATTTA
GCGCAAAGCA CACCAGTAGA AGATTTAAAA GTTTGGGGCC CACCCGCCGC TATAGCCTTT
AAAGATGGCG CCCCCACCAA AGCTGCCGAA GCCTTTGCCA AGAAAAACGG CGTCGAAGTT
AGCGAACTTG CTACCGAAAA TGACGGAAAA GCGGATAAGT TGGTAGTAAA TGCTAAAGCT
GGTGGTGAAG CTGCAGCCGA CTTACTAGAA GGTATTGTTA ATGCATCCCT AGCGGCCTTG
CCCATTAGCA AGCGCATGCG CTGGGGCGCC AGCCGAGCGG AATTTGTTCG CCCTGTGCAC
TGGGCTATTA TGTTGCTAAA CGACGATGTT TTACCTGCAA CCTTGCTAGG TAAAGCAACA
GGCAACGTTA CCCGCGGCCA TCGCTTTCAC GCCAACACCG ACATTACTAT TCAAAATGCA
CAAAGCTACG CCAGCACTTT GTTAGAGCAA GGTAAGGTAG TGGCCAGCTT TGAAGACCGC
CGCGCAACCA TCGCCAAACA AGTTGCCGAG CAAGCTAAAA GCCTAGGGGG CGAAGCGGTA
ATTAGCGACG ACCTATTAGA CGAAGTAAGC GCATTGGTTG AATGGCCGGT TGCACTTGGT
GGTCGTTTTG ACGAATCGTT TTTATCGGTA CCCGCCGAAG CACTTATTTC TTCAATGAAA
GAGCACCAAA AGTACTTCCA CGTAGTAGAT AGCAAAGGCG CATTGTTGCC TTACTTTATT
ACTGTATCCA ATATTGAAAG TACCGACCCT GCGCAGGTTA TTGACGGCAA CGAGCGCGTT
ATTCGCCCGC GCTTAGCCGA CGCCGCCTTC TTTTTTGAAA CCGATAAGAA AAGCAGCTTA
GAAGCTCGTC GCGAAAAGCT TAAGTCGGTA GTGTTCCAAG CGAAGTTAGG TACCATTTAC
GACAAAACTC AACGCATTAC CGGTTTATCG CAGCATATCG CCGACAAGTT ATCTATTGAT
GCAAGCAATG CGGTGCGTGC TGCGCAACTG TGTAAATCTG ACCTTGTAAG CAATATGGTG
TACGAGTTCC CAGAGATGCA GGGCATTGCA GGTTACAGTT ACGCACTGAA CGACGGCGAA
AACGAAACTG TTGCGCAGGC AATTGTTGAA CAATATATGC CTAAATTTGC GGGCGATACT
CTGCCAGCTA GCGACGAAGG CACCATTGTA GCCTTAGCAG ACAGGTTAGA TACCATTACC
GGTATTTTCG GCATTGGCCA AACGCCTACA GGCTCCAAAG ATCCTTTCGC CCTGCGCCGT
GCATCTCTGG GTGCGTTGCG CTTGCTGGTA GAAAAGGGTT ACGAGCTGGA CTTACGTGAT
TTAATTACTC AAGCCGCCGG CCAATTTAGC GACCTGCCTA AAGCAGACTC AGTAGTAGAA
GATGTATTGG CATACATGCT TGAGCGCTTC AAAGCTTGGT ACGAAGAAGC CAATATTCCT
TCTGAAGTAT TCCAAGCAGT AAGTGCAAAA CAGCTTTCTA CGCCGTTAGA TATTAACAAT
CGTGTTTACG CTGTTAATAG CTTCTACTCA TTGCCGCAAG CTGCTGCACT GGCTTCGGCC
AACAAGCGTG TGTCGAATAT TTTGGCCAAA AACGATGCTG AAGTAGCCGG TGAAGTAGAT
GCAGCATTAC TTACCGAAGC CGCCGAAATT GCCTTGGCCA AGCAAGTGCA AAAAATGCAA
ACTGCGGTTA CCCCGCTGTT AGCCGAGCGC AACTACGAGC AAGCCCTAAC AACATTGGCA
GGCTTGCGCG AAGCAGTAGA TAGCTTTTTT GACGATGTAA TGGTGATGAC CGACGACCTA
GCCGTAAGAA ATAACCGCTT AGCGCTGCTA AGCAAACTGC GTGAACTGTT TTTACACGTA
GCAGATATTT CTTTGTTAGC GGTTAAAGCG TAA
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| Protein sequence | MSYEFLVELG TEELPPTALK TLSNAFTQGI CNGLDSAKLS YSAVESYATP RRLAVWVKDL
AQSTPVEDLK VWGPPAAIAF KDGAPTKAAE AFAKKNGVEV SELATENDGK ADKLVVNAKA
GGEAAADLLE GIVNASLAAL PISKRMRWGA SRAEFVRPVH WAIMLLNDDV LPATLLGKAT
GNVTRGHRFH ANTDITIQNA QSYASTLLEQ GKVVASFEDR RATIAKQVAE QAKSLGGEAV
ISDDLLDEVS ALVEWPVALG GRFDESFLSV PAEALISSMK EHQKYFHVVD SKGALLPYFI
TVSNIESTDP AQVIDGNERV IRPRLADAAF FFETDKKSSL EARREKLKSV VFQAKLGTIY
DKTQRITGLS QHIADKLSID ASNAVRAAQL CKSDLVSNMV YEFPEMQGIA GYSYALNDGE
NETVAQAIVE QYMPKFAGDT LPASDEGTIV ALADRLDTIT GIFGIGQTPT GSKDPFALRR
ASLGALRLLV EKGYELDLRD LITQAAGQFS DLPKADSVVE DVLAYMLERF KAWYEEANIP
SEVFQAVSAK QLSTPLDINN RVYAVNSFYS LPQAAALASA NKRVSNILAK NDAEVAGEVD
AALLTEAAEI ALAKQVQKMQ TAVTPLLAER NYEQALTTLA GLREAVDSFF DDVMVMTDDL
AVRNNRLALL SKLRELFLHV ADISLLAVKA
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