| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0002 |
|---|
| Symbol | |
|---|
| ID | 3968821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2145 |
|---|
| End bp | 3248 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637919061 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_525478 |
|---|
| Protein GI | 90019651 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000000905958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.127223 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA TTGTTTCACG TGAAACTATT CTTAAACCAC TACAGTTGGT TGCCGGTGTG
GTAGAGCGTC GTCAAACATT GCCCGTGTTG GCAAACGTAT TGATTGTATT AGAAGGCGAG
CAGTTGTCGC TTACAGGTAC AGACCTTGAG GTAGAGATTG TGGGCCGCGT AACTGTCGAT
CAGGCAATTA GCGAAGGCGA AATTACTGTA CCCGCTAAGA AGTTCCTAGA TATATGTCGT
GCACTACCAG ACGGTTCAGT TATTGAGTTT ACGCTTGATG ATCAGAAAGT TACTGTAAAA
AGTGGCCGCA GTCGTTTTAC GCTTTCATCT TTATCTGCCA ATGAATTCCC AGCGGTAGAG
CAGGGCAGCA ACGATATTAA CTTTAGCTGC GAGCAAAAAG AGGTTAAGCG CCTTATTGAT
CGCACTGCGT TTGCTATGGC GCAGCAAGAT GTTCGTTACT ACTTAAATGG TATGTTGTGG
GAAGTGCGAG CAGGAGCTTT ACGTGTAGTG TCTACCGATG GCCACCGATT AGCCATGTGT
ACTCGCCCAA TCAATATAGA TGTAGCAGAG CCAGTACAGG CAATTTTGCC GCGTAAGGGT
GTTATTGAAT TGTCGCGCTT GCTTAACGAT TCAGAAGAAA ATGTTGAGCT AACTATGGGC
CCTAACCATA TTCGTGCTAC CACTACTGAA TACACCTTTA CCTCCAAGCT TGTAGACGGC
AAGTTCCCAG ATTACGAGCG CGTATTACCT AAGGGTGGGG ACAAGATTGT ATTGGGTGAG
CGCGCTGTAC TAAAACAAGC ATTTGCCCGT ACAGCTATTC TTTCTAACGA GAAATACCGC
GGTGTGCGTC TTCTATTAGA AACTGGCCAG CTTACTATTA TTGCTAACAA CCCAGAGCAA
GAAGAAGCTG AGGATCAAGT AGCCGTAGAG TATGAAGGTG ACTCAATTGA GGTAGGTTTT
AACGTTAGCT ACCTACAAGA TGTAACCAAC GTACTAGATA CAGACAAGAT TAAAATGACG
CTTTCTGATT CTAATAGCAG TGCTTTGCTA GAAGAGCCAG AAAACGCCGA CTCTGTATAT
GTAGTAATGC CAATGCGTCT ATAA
|
|---|
| Protein sequence | MKFIVSRETI LKPLQLVAGV VERRQTLPVL ANVLIVLEGE QLSLTGTDLE VEIVGRVTVD
QAISEGEITV PAKKFLDICR ALPDGSVIEF TLDDQKVTVK SGRSRFTLSS LSANEFPAVE
QGSNDINFSC EQKEVKRLID RTAFAMAQQD VRYYLNGMLW EVRAGALRVV STDGHRLAMC
TRPINIDVAE PVQAILPRKG VIELSRLLND SEENVELTMG PNHIRATTTE YTFTSKLVDG
KFPDYERVLP KGGDKIVLGE RAVLKQAFAR TAILSNEKYR GVRLLLETGQ LTIIANNPEQ
EEAEDQVAVE YEGDSIEVGF NVSYLQDVTN VLDTDKIKMT LSDSNSSALL EEPENADSVY
VVMPMRL
|
|---|
| |