| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4242 |
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| Symbol | |
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| ID | 3961980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4709438 |
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| End bp | 4711153 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637919056 |
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| Product | 60 kDa inner membrane insertion protein |
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| Protein accession | YP_525460 |
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| Protein GI | 89902989 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00149519 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGATA TTCGCCGCAC CATTTTGTGG GTGATTTTTG GCTTTTCCAT GGTTCTGCTG
TGGGATCAGT GGCAGGTTTT TAATGGCCAC AAAGCTACTT TTTTCCCCAG TGCGTCCAAC
ACGGCGGCAA CGGCCCACCC GCCGGTGCCT GCGTCCAGTG TGCCAGCGGG TGTTCCTACT
GCAAATACTG TAGCTGCTGC CGCACAGATG ACGGGGGCTG CAGCTGGATT GACCTCTACA
ACTGACGCGT CTGCCGCAGC CCACGAGCGC TTGGTCGTGA CAACCGATGT ACTCAAGCTC
ACCTTTGATA CCGAAGGCGC GTCGGTTGTA CAAACCGAGT TTGTCAGGCA CGCCGACATG
GCTGACAAGA GCAAACACTT TGTTCTGCTG GAGAGCAACA AAGACCATAC CTACATGGCG
CAAACTGGGC TGATTGCCGG GGCGGCAGGC GGCACTTTTC CGACGCACAA GACCGTCATG
ACCGTCGCTC CAGGGGAGCG CACGTTGCAG GAGGGCAGCA ATCAACTGGT TATCCGGTTC
GAATCCCCGG AGCTTGGCGG CGTCAAACTG GTAAAGACCT TTACCCTCAC CCGTGGCACC
TATGCGGTGG CAGTCAAGCA TGAGGTGGTC AACGTTGGCA CCGCTGCGGT CTCGCCGCAG
TTGTACCTGC AGTTGGTGCG CGATGGCACC AAGCCGCTGG GAGAGTCCAA GTTCTATTCC
ACCTTCACCG GCCCGGCGAT CTATACCGAG GCCAAGAAAT ACCAGAAGGT CGACTTCAAG
GACATCGAAA ACAACAAGGT TGATGTCGAA AAGACTGCGG AAAGCGGCTA TGTGGCCATG
GTGCAGCATT ACTTTGCCAG TGCCTGGTTG TTGGGCGATG GCATCAAACG CGATCTGTTC
CTGCGCAAGG TCGATACCAA TCTGTATGCC GTTGGCATGA TCACCCCCAT GGACAACATT
GCGCCTGGCG CCAGCAAGTC CGTGGAGGCA AGATTCTTTG CTGGTCCACA GGAAGAAAAG
GTGCTTGAGG CACTGGCGCC AGGGCTGGAG TTGGTCAAGG ACTATGGCTG GCTGACCATT
TTGGCCAAGC CGTTGTACTG GTTGCTCCAT GCGATTGAAA GCTTCCTAGG TAACTGGGGG
TGGTCCATTG TCGCCTTGGT GTTGTTGTTA AAGGCGGCCT TTTACTGGCT CAATGCCAAG
GCCTACGCCA GCATGGCCAA GATGAAAGCG GTGAATCCGA AGGTCACCGA AATGCGGGAG
CGCCTGAAGG ACAACCCGCA GCAAATGCAG CAGGAGATGA TGCGCATCTA CCGCGAAGAA
AAAGTCAACC CCATGGGGGG CTGTTTCCCG ATCATGATTC AGATCCCGGT GTTCATTGCC
TTGTATTGGG TGCTTCTCGC CAGTGTTGAG ATGCGCAACG CGCCCTGGAT ACTGTGGATT
CACGATCTTT CATCGCCTGA TCCGTTCTAC ATTTTGCCGC TGGTGATGAC ATTGACGACT
GTGTTGCAGA CGTCCTTGAA TCCAGCGCCG CCGGACCCGA TGCAGGCCAA GATGATGTGG
TTCATGCCGC TGGCCTTCAG CGTGATGTTC TTCTTCTTCC CAGCGGGCTT GGTGCTGTAC
TGGATTACCA ACAATATCTT GTCGATCGCG CAGCAGTGGC TCATCAACAC CCGTATGGGC
GTGCCGCCGA AGTTCCATCT GCCCAGTTTC AAATGA
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| Protein sequence | MNDIRRTILW VIFGFSMVLL WDQWQVFNGH KATFFPSASN TAATAHPPVP ASSVPAGVPT
ANTVAAAAQM TGAAAGLTST TDASAAAHER LVVTTDVLKL TFDTEGASVV QTEFVRHADM
ADKSKHFVLL ESNKDHTYMA QTGLIAGAAG GTFPTHKTVM TVAPGERTLQ EGSNQLVIRF
ESPELGGVKL VKTFTLTRGT YAVAVKHEVV NVGTAAVSPQ LYLQLVRDGT KPLGESKFYS
TFTGPAIYTE AKKYQKVDFK DIENNKVDVE KTAESGYVAM VQHYFASAWL LGDGIKRDLF
LRKVDTNLYA VGMITPMDNI APGASKSVEA RFFAGPQEEK VLEALAPGLE LVKDYGWLTI
LAKPLYWLLH AIESFLGNWG WSIVALVLLL KAAFYWLNAK AYASMAKMKA VNPKVTEMRE
RLKDNPQQMQ QEMMRIYREE KVNPMGGCFP IMIQIPVFIA LYWVLLASVE MRNAPWILWI
HDLSSPDPFY ILPLVMTLTT VLQTSLNPAP PDPMQAKMMW FMPLAFSVMF FFFPAGLVLY
WITNNILSIA QQWLINTRMG VPPKFHLPSF K
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