| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4241 |
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| Symbol | trmE |
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| ID | 3961979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4707975 |
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| End bp | 4709384 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637919055 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_525459 |
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| Protein GI | 89902988 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.207719 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGCTGC CGCGTCATCA AGACCCAATT GTCGCCATTG CCACTGCCCC CGGTCGGGGT
GCGGTGGGCA TTGTGCGGGT CAGCGGGAAA AGTATTGGGT CTTTAATGCA GGCGCTTTTG
GGGCGGCAGC TGAGGGCCCG TGAGGCAACT TACCTGCCGT TTCTTGATCG CAGCCAATTG
GCGATTGACC AGGGAATCGC GCTCTATTTT CCAGCGCCTC ATTCGTTTAC GGGTGAAGAT
GTGTTGGAGT TGCAGGCGCA TGGTGGGCCG GTGGTACTGC AACTGTTGCT GGCACGTTGC
CTGGAGGCCG GGGCAGAGCT TGATCCCGTC AGTCAGATGC CTCGGCTGGT GGGTTTGCGA
CCCGCGCTGC CTGGCGAATT TTCAGAGCGC GCTTTCCTGA ATGACAAGAT TGATCTGGCC
CAGGCGGAGG CTATCGCTGA CCTGATCGAT GCCAGTACCG AGGCGGCGGC CCGCAGTGCC
AGCCGCTCTT TGTCAGGCGC TTTCTCCCAA GAAATCCATA TCTTGCGCGA GGCCTTGATT
CATTTGCGGA TGCTGGTGGA GGCGACGCTG GATTTTCCTG AAGAAGAAAT CGACTTTTTG
CGCCAAGCAG ATGCGCGCGG GCAATTGTCA GATTTACAGC AGTCACTGCA ATCCGTGCTG
CAAAAGGCGA GCCAGGGCGC CCTGCTACGT GAAGGGATCA CGGTCGTGAT CGCAGGTCAG
CCCAACGTCG GCAAGTCGTC CTTACTCAAT GCGCTGGCGG GGGCTGAGTT GGCGATCGTG
ACGCCAATCG CCGGTACCAC CCGAGATAAA GTGCAACAGA CCATCCAGAT CGAAGGTGTG
CCGGTTCATG TGATCGACAC GGCAGGCTTG CGCGACAGCG ATGATGTGAT AGAAAAAATA
GGCATCGCCC GCACCTGGGA TGTGATTGAG GCGGCCGACG CGGTCTTGTT TTTGCATGAC
TTGACACGTA AAAACGCTAC AGATTACATA GCTGCTGACG CAGTCATCGC AGAGGCTATC
GCCGGGAAGT TGTCTGCAAG CGTGCCAGTG ATTGAAATCT GGAACAAGGC CGATGTGATC
GACCGACCGT GTCAGCAGGC GGGTTTGCAG TTGTCAGCCA AGACCGGCGC TGGACTGGAC
ACTTTGCGCC GAAAATTGCT GGAGCTGGTG GGTTGGCAGT CTAAGCCCGA GGGTGTCTAT
ATGGCACGTG AACGGCATGT GCAGGCATTG CACCGGACGG CGGCTCATTT GATGACCGCC
GGCTTCCACC TGGAGGCCAA GGCCCAAGCG CTTGATCTGC TGGCCGAAGA GCTCCGCCTG
GCACAAAATG CACTGGGTGA AATAACGGGC GACTTTTCAT CAGACGATCT TCTTGGAGTG
ATATTCTCGC GGTTTTGTAT TGGCAAATAG
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| Protein sequence | MSLPRHQDPI VAIATAPGRG AVGIVRVSGK SIGSLMQALL GRQLRAREAT YLPFLDRSQL
AIDQGIALYF PAPHSFTGED VLELQAHGGP VVLQLLLARC LEAGAELDPV SQMPRLVGLR
PALPGEFSER AFLNDKIDLA QAEAIADLID ASTEAAARSA SRSLSGAFSQ EIHILREALI
HLRMLVEATL DFPEEEIDFL RQADARGQLS DLQQSLQSVL QKASQGALLR EGITVVIAGQ
PNVGKSSLLN ALAGAELAIV TPIAGTTRDK VQQTIQIEGV PVHVIDTAGL RDSDDVIEKI
GIARTWDVIE AADAVLFLHD LTRKNATDYI AADAVIAEAI AGKLSASVPV IEIWNKADVI
DRPCQQAGLQ LSAKTGAGLD TLRRKLLELV GWQSKPEGVY MARERHVQAL HRTAAHLMTA
GFHLEAKAQA LDLLAEELRL AQNALGEITG DFSSDDLLGV IFSRFCIGK
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