| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3878 |
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| Symbol | |
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| ID | 3961480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4329465 |
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| End bp | 4330508 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637918703 |
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| Product | twitching motility protein |
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| Protein accession | YP_525108 |
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| Protein GI | 89902637 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0576559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACATCA CCCAATTACT GGCCTTCAGC GTCAAGAACA AGGCGTCTGA CCTGCACCTC
TCCTCCGGTC TGCCCCCCAT GATTCGCGTC AATGGCGACG TGCGGCGCAT CAACGTCGAA
GCGCTCGATC ACAAGCAGGT GCATGCCATG GTGTATGACA TCATGAACGA CTCGCAACGC
AAGGTGTATG AAGAGTTTTG GGAGGTTGAC TTCTCGTTCG AGATTGAAGG GCTGGCCCGC
TTTCGGGTCA ATGCCTACAA CCAGCAACGC GGGGCGGGTG CGGTGTTTCG GACCATCCCG
AGCAAAATCT TGACCCTGGA GCAATTGAAC GCACCGAAGA TTTTTGCCGA TCTGGCGCTC
AAACCGCGCG GCCTGGTGCT GGTGACCGGC CCCACCGGGT CCGGCAAGTC GACCACCCTG
GCGGCCATGG TCAACTTTCT CAATGAAACC GAGTTCGGCC ACATCCTGAC GGTGGAAGAC
CCGATCGAGT TTGTGCATGA GTCCAAAAAA TGTCTGGTCA ACCAGCGCGA GGTTGGCACC
CACACGCTCA GTTTTGCCGC CGCCCTGCGC TCGGCCCTGC GCGAAGACCC GGACGCCATT
CTGGTGGGCG AAATGCGCGA CCTGGAAACC ATCCGCCTGG CCATGACCGC CGCCGAAACC
GGCCACCTGG TGTTTGGCAC CTTGCATACC TCCAGCGCTG CCAAGACCAT TGACCGCGTC
ATCGATGTCT TTCCGGCCGA AGAAAAAGAG ATGGTGCGCG CCATGTTGTC CGAATCCCTG
CAGGCGGTGA TCTCGCAGAC CCTGTGCAAA ACCAAGGACG GCCAGGGCCG GGTTGCGGCG
CACGAGATCA TGCTCGGCAC CAGCGCCATC CGCAATTTGA TCCGTGAGGC CAAGGTGGCG
CAGATGTATT CGAGCATTCA GACCGGCAAC AGTGTGGGCA TGCAGACACT GGATCAGAAC
CTGAGTGATC TGGTCAAACG CAACATCATC AGTCCGTCGG AAGCGCGCTC CAAAGCCAAG
ATTCCGGAGA ATTTCCCCGG CTAA
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| Protein sequence | MDITQLLAFS VKNKASDLHL SSGLPPMIRV NGDVRRINVE ALDHKQVHAM VYDIMNDSQR
KVYEEFWEVD FSFEIEGLAR FRVNAYNQQR GAGAVFRTIP SKILTLEQLN APKIFADLAL
KPRGLVLVTG PTGSGKSTTL AAMVNFLNET EFGHILTVED PIEFVHESKK CLVNQREVGT
HTLSFAAALR SALREDPDAI LVGEMRDLET IRLAMTAAET GHLVFGTLHT SSAAKTIDRV
IDVFPAEEKE MVRAMLSESL QAVISQTLCK TKDGQGRVAA HEIMLGTSAI RNLIREAKVA
QMYSSIQTGN SVGMQTLDQN LSDLVKRNII SPSEARSKAK IPENFPG
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